Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPS28
  • Mouse genes Rps28
  • Rat genes Rps28,Rps28-ps3
  • Zfish genes rps28
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rps28

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:O95273	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:P0C7H8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:P60409	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:P60410	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:Q7Z3S9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:O75031	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RPS28	IPI	UniProtKB:Q07627	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rps28	IPI	RGD:71058	Rat	PMID:16518874|RGD:10054427
Molecular Function	GO:0003723	RNA binding	RPS28	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RPS28	HDA		Human	PMID:22681889
Molecular Function	GO:0003735	structural constituent of ribosome	RPS28	HDA		Human	PMID:15883184
Molecular Function	GO:0003735	structural constituent of ribosome	RPS28	IMP		Human	PMID:18697920
Molecular Function	GO:0003735	structural constituent of ribosome	RPS28	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	Rps28	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS28	HDA		Human	PMID:15883184
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS28	IDA		Human	PMID:23636399
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS28	IDA		Human	PMID:8706699
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps28	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps28	IDA		Rat	PMID:947902|RGD:2300010
Cellular Component	GO:0070062	extracellular exosome	RPS28	HDA		Human	PMID:20458337
Cellular Component	GO:0042788	polysomal ribosome	RPS28	IDA		Human	PMID:25957688
Cellular Component	GO:0015935	small ribosomal subunit	RPS28	HDA		Human	PMID:15883184
Cellular Component	GO:0045202	synapse	Rps28	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Rps28	IDA		Mouse	PMID:25211037
Biological Process	GO:0002181	cytoplasmic translation	RPS28	IDA		Human	PMID:25957688
Biological Process	GO:0042274	ribosomal small subunit biogenesis	RPS28	IMP		Human	PMID:18697920
Biological Process	GO:0042254	ribosome biogenesis	RPS28	IMP		Human	PMID:24942156
Biological Process	GO:0006364	rRNA processing	RPS28	IMP		Human	PMID:18697920

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern