Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPS29
  • Mouse genes Rps29
  • Rat genes Rps29,Rps29-ps15,Rps29-ps16,Rps29-ps17
  • Zfish genes rps29
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rps29

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003735	structural constituent of ribosome	RPS29	HDA		Human	PMID:15883184
Molecular Function	GO:0003735	structural constituent of ribosome	RPS29	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	Rps29	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Molecular Function	GO:0008270	zinc ion binding	RPS29	IDA		Human	PMID:25957688
Molecular Function	GO:0008270	zinc ion binding	RPS29	IDA		Human	PMID:8781548
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS29	HDA		Human	PMID:15883184
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS29	IDA		Human	PMID:23636399
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS29	IDA		Human	PMID:8706699
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps29	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps29	IDA		Rat	PMID:8441676|RGD:633964
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps29	IDA		Rat	PMID:925037|RGD:2300014
Cellular Component	GO:0070062	extracellular exosome	RPS29	HDA		Human	PMID:20458337
Cellular Component	GO:0005925	focal adhesion	RPS29	HDA		Human	PMID:21423176
Cellular Component	GO:0042788	polysomal ribosome	RPS29	IDA		Human	PMID:25957688
Cellular Component	GO:0015935	small ribosomal subunit	RPS29	HDA		Human	PMID:15883184
Biological Process	GO:0001525	angiogenesis	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:19332767
Biological Process	GO:0043009	chordate embryonic development	rps29	IMP	ZFIN:ZDB-MRPHLNO-070327-3	Zfish	PMID:17183665
Biological Process	GO:0002181	cytoplasmic translation	RPS29	IDA		Human	PMID:25957688
Biological Process	GO:0048821	erythrocyte development	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:22120640
Biological Process	GO:0030218	erythrocyte differentiation	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:24829207
Biological Process	GO:0060218	hematopoietic stem cell differentiation	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:19332767
Biological Process	GO:0072332	intrinsic apoptotic signaling pathway by p53 class mediator	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:22120640
Biological Process	GO:0043065	positive regulation of apoptotic process	Rps29	IDA		Rat	PMID:11032747|RGD:11040963
Biological Process	GO:0051726	regulation of cell cycle	rps29	IMP	ZFIN:ZDB-GENO-040622-7	Zfish	PMID:15138505
Biological Process	GO:0001570	vasculogenesis	rps29	IMP	ZFIN:ZDB-GENO-090730-8	Zfish	PMID:19332767

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern