Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RS1
  • Mouse genes Rs1
  • Rat genes Rs1
  • Zfish genes rs1a,rs1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rs1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005547	phosphatidylinositol-3,4,5-trisphosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0043325	phosphatidylinositol-3,4-bisphosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0032266	phosphatidylinositol-3-phosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0070273	phosphatidylinositol-4-phosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0010314	phosphatidylinositol-5-phosphate binding	Rs1	IDA		Mouse	PMID:17325137
Molecular Function	GO:0001786	phosphatidylserine binding	Rs1	IDA		Mouse	MGI:MGI:4839863|PMID:20677810
Molecular Function	GO:0001786	phosphatidylserine binding	Rs1	IDA		Mouse	PMID:17325137
Cellular Component	GO:0009897	external side of plasma membrane	RS1	IGI	UniProtKB:P14231	Human	PMID:21196491
Cellular Component	GO:0009897	external side of plasma membrane	Rs1	IDA		Mouse	PMID:17325137
Cellular Component	GO:0005576	extracellular region	Rs1	IDA		Mouse	PMID:12853421
Cellular Component	GO:0005615	extracellular space	RS1	IDA		Human	PMID:19849666
Cellular Component	GO:0098984	neuron to neuron synapse	Rs1	IDA		Mouse	MGI:MGI:4939095|PMID:21196491
Cellular Component	GO:0001917	photoreceptor inner segment	Rs1	IDA		Mouse	MGI:MGI:4939095|PMID:21196491
Biological Process	GO:0016062	adaptation of rhodopsin mediated signaling	Rs1	IMP	MGI:MGI:3056058	Mouse	PMID:15326152
Biological Process	GO:0051260	protein homooligomerization	RS1	IDA		Human	PMID:19849666
Biological Process	GO:0010842	retina layer formation	Rs1	IMP	MGI:MGI:2179757	Mouse	PMID:11983912
Biological Process	GO:0010842	retina layer formation	Rs1	IMP	MGI:MGI:3056058	Mouse	PMID:15326152
Biological Process	GO:0007601	visual perception	RS1	IMP		Human	PMID:19093009

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern