Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RYBP
  • Mouse genes Rybp
  • Rat genes Rybp
  • Zfish genes rybpa,rybpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rybp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Rybp	IDA		Mouse	PMID:15574595
Molecular Function	GO:0003676	nucleic acid binding	RYBP	EXP		Human	PMID:19170609
Molecular Function	GO:0003676	nucleic acid binding	RYBP	EXP		Human	PMID:20696397
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:16943429
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:16943429
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P0CG48	Human	PMID:17070805
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587-2	Human	PMID:17070805
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P04637	Human	PMID:19098711
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q00987	Human	PMID:19098711
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:20696397
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P0C6X7:PRO_0000037319	Human	PMID:22046132
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q923J1	Human	PMID:24855944
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9BSM1	Human	PMID:26687479
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q8TC84	Human	PMID:27060496
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:27705803
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:27705803
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587-2	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P20618	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q8N9N5-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q96JC9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9HD64	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:G5E9A7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:O14908-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:O43464	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:O43933	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:O60260-5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:O60333-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P00441	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P00451-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P02489	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P02545	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P07196	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P0CG47	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P14618	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P21333-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P21964-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P21980-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P26378-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P28799	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P31153	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P35240-4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P35637	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P37840	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P49458	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P49768-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P49810	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P78333	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q00403	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q01658	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q13148	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q14203-5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q16143	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q7Z699	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q8WUW1	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q92597	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99719	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9NUW8	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9P1N4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9Y3C5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q9Y5Q9	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P04637	Human	PMID:34316702
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:P35637	Human	PMID:34316702
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q06587	Human	PMID:34316702
Molecular Function	GO:0005515	protein binding	RYBP	IPI	UniProtKB:Q99496	Human	PMID:34316702
Molecular Function	GO:0005515	protein binding	Rybp	IPI	UniProtKB:Q9CQJ4	Mouse	MGI:MGI:5431036|PMID:22325148
Molecular Function	GO:0005515	protein binding	Rybp	IPI	UniProtKB:O35730	Mouse	MGI:MGI:5431036|PMID:22325148
Molecular Function	GO:0005515	protein binding	Rybp	IPI	UniProtKB:Q9CQJ4	Mouse	MGI:MGI:5009373|PMID:19170609
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:O35730	Mouse	PMID:10369680
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:P59178	Mouse	PMID:22770845
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:Q00899	Mouse	PMID:21530438
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:P22227	Mouse	PMID:21530438
Molecular Function	GO:0005515	protein binding	Rybp	IPI	UniProtKB:P25490	Mouse	PMID:10369680
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:P30658	Mouse	PMID:10369680
Molecular Function	GO:0005515	protein binding	Rybp	IPI	PR:Q9CQJ4	Mouse	PMID:10369680
Molecular Function	GO:0003714	transcription corepressor activity	Rybp	IDA		Mouse	PMID:10369680
Cellular Component	GO:0005654	nucleoplasm	RYBP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	Rybp	IDA		Mouse	PMID:10369680
Cellular Component	GO:0005634	nucleus	RYBP	IDA		Human	PMID:27060496
Cellular Component	GO:0005634	nucleus	Rybp	IDA		Mouse	PMID:22770845
Cellular Component	GO:0005634	nucleus	Rybp	IDA		Mouse	PMID:10919273
Cellular Component	GO:0031519	PcG protein complex	RYBP	IDA		Human	PMID:16943429
Biological Process	GO:0006338	chromatin remodeling	RYBP	IDA		Human	PMID:16943429
Biological Process	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	RYBP	IMP		Human	PMID:27060496
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rybp	IDA		Mouse	PMID:10369680
Biological Process	GO:0043065	positive regulation of apoptotic process	RYBP	IMP		Human	PMID:27060496
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RYBP	IMP		Human	PMID:27060496

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern