Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Sall1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SALL1
- Mouse genes Sall1
- Rat genes Sall1
- Zfish genes sall1a,sall1b
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sall1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008013	beta-catenin binding	SALL1	IDA		Human	PMID:15158448
Molecular Function	GO:0003682	chromatin binding	Sall1	IDA		Mouse	PMID:20439720
Molecular Function	GO:0000987	cis-regulatory region sequence-specific DNA binding	Sall1	IDA		Mouse	MGI:MGI:4946171\|PMID:21062744
Molecular Function	GO:0003677	DNA binding	Sall1	IDA		Mouse	PMID:19168674
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Sall1	IDA		Mouse	MGI:MGI:4946171\|PMID:21062744
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	Sall1	IDA		Mouse	MGI:MGI:3829797\|PMID:19168674
Molecular Function	GO:0005515	protein binding	SALL1	IPI	UniProtKB:Q8N1B3	Human	PMID:18297069
Molecular Function	GO:0005515	protein binding	SALL1	IPI	UniProtKB:Q96KQ4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Sall1	IPI	PR:Q9R190	Mouse	PMID:11836251
Molecular Function	GO:0005515	protein binding	Sall1	IPI	PR:Q60973	Mouse	PMID:11836251
Molecular Function	GO:0005515	protein binding	Sall1	IPI	PR:P70288	Mouse	PMID:11836251
Molecular Function	GO:0005515	protein binding	Sall1	IPI	PR:Q8K4B0	Mouse	PMID:11836251
Molecular Function	GO:0005515	protein binding	Sall1	IPI	PR:O09106	Mouse	PMID:11836251
Molecular Function	GO:0044877	protein-containing complex binding	Sall1	IPI	ComplexPortal:CPX-953	Mouse	MGI:MGI:4430815\|PMID:16707490
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Sall1	IDA		Mouse	MGI:MGI:3829797\|PMID:19168674
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	Sall1	IPI	UniProtKB:P48432\|UniProtKB:Q80Z64	Mouse	MGI:MGI:4946171\|PMID:21062744
Cellular Component	GO:0010369	chromocenter	SALL1	IDA		Human	PMID:16443351
Cellular Component	GO:0005737	cytoplasm	SALL1	IDA		Human	PMID:12065233
Cellular Component	GO:0000792	heterochromatin	SALL1	IDA		Human	PMID:15158448
Cellular Component	GO:0000792	heterochromatin	Sall1	IDA		Mouse	PMID:17295837
Cellular Component	GO:0005634	nucleus	SALL1	IDA		Human	PMID:12065233
Cellular Component	GO:0005634	nucleus	SALL1	IDA		Human	PMID:16443351
Cellular Component	GO:0005634	nucleus	Sall1	IDA		Mouse	PMID:11836251
Cellular Component	GO:0005634	nucleus	Sall1	IDA		Mouse	PMID:18260139
Cellular Component	GO:0005634	nucleus	Sall1	IDA		Mouse	PMID:11688560
Cellular Component	GO:0016581	NuRD complex	Sall1	IDA		Mouse	PMID:11836251
Biological Process	GO:0030325	adrenal gland development	SALL1	IEP		Human	PMID:12065233
Biological Process	GO:0001658	branching involved in ureteric bud morphogenesis	Sall1	IMP		Mouse	MGI:MGI:2447943\|PMID:12482961
Biological Process	GO:0001658	branching involved in ureteric bud morphogenesis	Sall1	IMP	MGI:MGI:3603818	Mouse	PMID:24550112
Biological Process	GO:0048566	embryonic digestive tract development	SALL1	IMP		Human	PMID:18280297
Biological Process	GO:0042733	embryonic digit morphogenesis	SALL1	IMP		Human	PMID:18280297
Biological Process	GO:0042733	embryonic digit morphogenesis	Sall1	IMP		Mouse	MGI:MGI:4461128\|PMID:18470945
Biological Process	GO:0035118	embryonic pectoral fin morphogenesis	sall1a	IMP	ZFIN:ZDB-MRPHLNO-060328-5	Zfish	PMID:16501170
Biological Process	GO:0035136	forelimb morphogenesis	Sall1	IGI	MGI:MGI:109295	Mouse	PMID:19168674
Biological Process	GO:0097154	GABAergic neuron differentiation	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0008406	gonad development	SALL1	IEP		Human	PMID:11511981
Biological Process	GO:0007507	heart development	SALL1	IMP		Human	PMID:11484202
Biological Process	GO:0035137	hindlimb morphogenesis	Sall1	IGI	MGI:MGI:109295	Mouse	PMID:19168674
Biological Process	GO:0031129	inductive cell-cell signaling	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:11688560
Biological Process	GO:0001822	kidney development	SALL1	IMP		Human	PMID:16971658
Biological Process	GO:0072073	kidney epithelium development	Sall1	IMP		Mouse	MGI:MGI:3665498\|PMID:16839447
Biological Process	GO:0060173	limb development	SALL1	IMP		Human	PMID:18470945
Biological Process	GO:0072309	mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis	Sall1	IMP	MGI:MGI:3603818	Mouse	PMID:24550112
Biological Process	GO:0003337	mesenchymal to epithelial transition involved in metanephros morphogenesis	SALL1	IEP		Human	PMID:11511981
Biological Process	GO:0003337	mesenchymal to epithelial transition involved in metanephros morphogenesis	Sall1	IMP		Mouse	MGI:MGI:2149437\|PMID:11688560
Biological Process	GO:0003337	mesenchymal to epithelial transition involved in metanephros morphogenesis	Sall1	IMP	MGI:MGI:3603818	Mouse	PMID:24550112
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	SALL1	IDA		Human	PMID:16443351
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Sall1	IDA		Mouse	MGI:MGI:4430815\|PMID:16707490
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Sall1	IMP		Mouse	MGI:MGI:4461128\|PMID:18470945
Biological Process	GO:2000384	negative regulation of ectoderm development	Sall1	IMP		Mouse	MGI:MGI:4946171\|PMID:21062744
Biological Process	GO:0003340	negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis	Sall1	IMP	MGI:MGI:3603818	Mouse	PMID:24550112
Biological Process	GO:2000381	negative regulation of mesoderm development	Sall1	IMP		Mouse	MGI:MGI:4946171\|PMID:21062744
Biological Process	GO:0045879	negative regulation of smoothened signaling pathway	Sall1	IGI	MGI:MGI:109295	Mouse	PMID:19168674
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	SALL1	IDA		Human	PMID:16443351
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sall1	IMP		Mouse	MGI:MGI:4461128\|PMID:18470945
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sall1	IDA		Mouse	MGI:MGI:3829797\|PMID:19168674
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sall1	IDA		Mouse	MGI:MGI:4430815\|PMID:16707490
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sall1	IDA		Mouse	PMID:11836251
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sall1	IGI	MGI:MGI:96205	Mouse	PMID:19168674
Biological Process	GO:0001843	neural tube closure	Sall1	IGI	MGI:MGI:2139360	Mouse	PMID:16790473
Biological Process	GO:0021915	neural tube development	Sall1	IGI	MGI:MGI:2139360	Mouse	PMID:18818376
Biological Process	GO:0030182	neuron differentiation	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0021772	olfactory bulb development	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0021889	olfactory bulb interneuron differentiation	Sall1	IMP		Mouse	MGI:MGI:4420747\|PMID:18024993
Biological Process	GO:0061034	olfactory bulb mitral cell layer development	SALL1	IMP		Human	PMID:18024993
Biological Process	GO:0021553	olfactory nerve development	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0021983	pituitary gland development	SALL1	IEP		Human	PMID:12065233
Biological Process	GO:0090190	positive regulation of branching involved in ureteric bud morphogenesis	Sall1	IMP	MGI:MGI:3603818	Mouse	PMID:24550112
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	SALL1	IDA		Human	PMID:15158448
Biological Process	GO:0045743	positive regulation of fibroblast growth factor receptor signaling pathway	sall1a	IGI	ZFIN:ZDB-MRPHLNO-060328-1,ZFIN:ZDB-MRPHLNO-060328-5	Zfish	PMID:16501170
Biological Process	GO:0045666	positive regulation of neuron differentiation	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	SALL1	IDA		Human	PMID:15158448
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:20439720
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Sall1	IDA		Mouse	PMID:20439720
Biological Process	GO:0030177	positive regulation of Wnt signaling pathway	SALL1	IDA		Human	PMID:15158448
Biological Process	GO:1902692	regulation of neuroblast proliferation	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:18024993
Biological Process	GO:0007224	smoothened signaling pathway	Sall1	IGI	MGI:MGI:109295	Mouse	PMID:19168674
Biological Process	GO:0006366	transcription by RNA polymerase II	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:20439720
Biological Process	GO:0001657	ureteric bud development	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:11688560
Biological Process	GO:0072092	ureteric bud invasion	Sall1	IMP		Mouse	MGI:MGI:2149437\|PMID:11688560
Biological Process	GO:0072092	ureteric bud invasion	Sall1	IMP	MGI:MGI:2388379	Mouse	PMID:16839447
Biological Process	GO:0003281	ventricular septum development	Sall1	IMP		Mouse	MGI:MGI:4461128\|PMID:18470945
Biological Process	GO:0003281	ventricular septum development	Sall1	IGI	MGI:MGI:2139360	Mouse	PMID:16790473

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.