Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SAMD1
  • Mouse genes Samd1
  • Rat genes Samd1
  • Zfish genes samd1a,samd1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Samd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	SAMD1	IDA		Human	PMID:33980486
Molecular Function	GO:0030169	low-density lipoprotein particle binding	Samd1	IDA		Mouse	MGI:MGI:6810804|PMID:34006929
Molecular Function	GO:0005515	protein binding	SAMD1	IPI	UniProtKB:O60341,UniProtKB:Q96JM7	Human	PMID:33980486
Cellular Component	GO:0005615	extracellular space	Samd1	IDA		Mouse	MGI:MGI:6810804|PMID:34006929
Cellular Component	GO:0005634	nucleus	SAMD1	IDA		Human	PMID:33980486
Biological Process	GO:0090077	foam cell differentiation	Samd1	IDA		Mouse	MGI:MGI:6810804|PMID:34006929
Biological Process	GO:0034439	lipoprotein lipid oxidation	Samd1	IDA		Mouse	MGI:MGI:6810804|PMID:34006929
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Samd1	IDA		Mouse	MGI:MGI:6810804|PMID:34006929
Biological Process	GO:0051260	protein homooligomerization	SAMD1	IDA		Human	PMID:33980486
Biological Process	GO:0090308	regulation of DNA methylation-dependent heterochromatin formation	SAMD1	IDA		Human	PMID:33980486

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern