Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SARNP
  • Mouse genes Sarnp
  • Rat genes Sarnp
  • Zfish genes sarnp
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sarnp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Sarnp	IDA		Mouse	PMID:18480465
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:Q13838	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:O00148	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:P26368	Human	PMID:18559666
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:Q01081	Human	PMID:18559666
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:O00148	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:Q13838	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SARNP	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0003723	RNA binding	SARNP	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SARNP	HDA		Human	PMID:22681889
Cellular Component	GO:0036464	cytoplasmic ribonucleoprotein granule	SARNP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SARNP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SARNP	IDA		Human	PMID:20844015
Cellular Component	GO:0005634	nucleus	Sarnp	IDA		Mouse	PMID:18480465
Cellular Component	GO:0000346	transcription export complex	SARNP	IDA		Human	PMID:20844015
Biological Process	GO:0006406	mRNA export from nucleus	SARNP	IDA		Human	PMID:20844015
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sarnp	IMP		Mouse	PMID:18480465
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Sarnp	IDA		Mouse	PMID:18480465

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern