Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCAF1
  • Mouse genes Scaf1
  • Rat genes Scaf1
  • Zfish genes scaf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Scaf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SCAF1	IPI	UniProtKB:O15499	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SCAF1	IPI	UniProtKB:Q6FHY5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SCAF1	IPI	UniProtKB:Q765P7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SCAF1	IPI	UniProtKB:Q8WWV3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SCAF1	IPI	UniProtKB:Q99828	Human	PMID:32296183
Molecular Function	GO:0019904	protein domain specific binding	Scaf1	IMP		Rat	PMID:8692929|RGD:1299392
Molecular Function	GO:0099122	RNA polymerase II C-terminal domain binding	SCAF1	IPI	UniProtKB:P24928	Human	PMID:15992770
Biological Process	GO:0006397	mRNA processing	Scaf1	IMP		Rat	PMID:8692929|RGD:1299392
Biological Process	GO:0006366	transcription by RNA polymerase II	Scaf1	IMP		Rat	PMID:8692929|RGD:1299392

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern