Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDF4
  • Mouse genes Sdf4
  • Rat genes Sdf4
  • Zfish genes sdf4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sdf4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	Sdf4	IDA		Mouse	MGI:MGI:80005|PMID:8609160
Molecular Function	GO:0042802	identical protein binding	Sdf4	IPI	UniProtKB:Q91ZS3-2	Rat	PMID:17442889|RGD:2312426
Molecular Function	GO:0005515	protein binding	SDF4	IPI	UniProtKB:O75400-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDF4	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDF4	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDF4	IPI	UniProtKB:Q9Y371	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Sdf4	IPI	RGD:619967	Rat	PMID:17442889|RGD:2312426
Molecular Function	GO:0005515	protein binding	Sdf4	IPI	UniProtKB:P61765	Rat	PMID:17442889|RGD:2312426
Cellular Component	GO:0005737	cytoplasm	Sdf4	IDA		Rat	PMID:17442889|RGD:2312426
Cellular Component	GO:0070062	extracellular exosome	SDF4	HDA		Human	PMID:19199708
Cellular Component	GO:0005794	Golgi apparatus	SDF4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005796	Golgi lumen	Sdf4	IDA		Mouse	MGI:MGI:80005|PMID:8609160
Cellular Component	GO:0005770	late endosome	Sdf4	IMP		Mouse	MGI:MGI:80005|PMID:8609160
Cellular Component	GO:0005770	late endosome	Sdf4	IDA		Rat	PMID:17442889|RGD:2312426
Cellular Component	GO:0016020	membrane	SDF4	HDA		Human	PMID:19946888
Cellular Component	GO:0005886	plasma membrane	Sdf4	IDA		Rat	PMID:17442889|RGD:2312426
Biological Process	GO:0017156	calcium-ion regulated exocytosis	Sdf4	IMP		Rat	PMID:17442889|RGD:2312426
Biological Process	GO:0021549	cerebellum development	Sdf4	IEP		Rat	PMID:18355758|RGD:8554427
Biological Process	GO:0045444	fat cell differentiation	Sdf4	IEP		Mouse	MGI:MGI:80005|PMID:8609160
Biological Process	GO:0099558	maintenance of synapse structure	SDF4	IGI	FB:FBgn0051475	Human	PMID:33667157
Biological Process	GO:0045471	response to ethanol	Sdf4	IEP		Rat	PMID:18355758|RGD:8554427
Biological Process	GO:0002040	sprouting angiogenesis	sdf4	IMP	ZFIN:ZDB-MRPHLNO-150302-3	Zfish	PMID:25384978
Biological Process	GO:0002040	sprouting angiogenesis	sdf4	IMP	ZFIN:ZDB-MRPHLNO-150302-7	Zfish	PMID:25384978
Biological Process	GO:0009650	UV protection	Sdf4	IMP		Rat	PMID:18355758|RGD:8554427
Biological Process	GO:0070625	zymogen granule exocytosis	Sdf4	IMP		Rat	PMID:17442889|RGD:2312426

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern