Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SEC13
  • Mouse genes Sec13
  • Rat genes Sec13
  • Zfish genes sec13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sec13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	SEC13	IPI	UniProtKB:P55735	Human	PMID:18160040
Molecular Function	GO:0042802	identical protein binding	SEC13	IPI	UniProtKB:P55735	Human	PMID:27194810
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:P52948	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:P57740	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q12769	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q8NFH4	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q8WUM0	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q9BW27	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:O94979	Human	PMID:16957052
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:O15027	Human	PMID:17428803
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:P49687	Human	PMID:18160040
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:O15027	Human	PMID:19638414
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q6Y7W6	Human	PMID:20696395
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q8NFH4	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:O15027	Human	PMID:25201882
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:O00463	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q96JE7-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q96EE3	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:P49687	Human	PMID:27194810
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q8NFH4	Human	PMID:27194810
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q96EE3	Human	PMID:27194810
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q8NFH4	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SEC13	IPI	UniProtKB:Q96JE7-2	Human	PMID:28514442
Cellular Component	GO:0030127	COPII vesicle coat	SEC13	IDA		Human	PMID:17499046
Cellular Component	GO:0005829	cytosol	Sec13	IDA		Rat	PMID:22303004|RGD:10413913
Cellular Component	GO:0070971	endoplasmic reticulum exit site	sec13	IDA		Zfish	PMID:22609279
Cellular Component	GO:0070062	extracellular exosome	SEC13	HDA		Human	PMID:19056867
Cellular Component	GO:0061700	GATOR2 complex	SEC13	IDA		Human	PMID:23723238
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	SEC13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000776	kinetochore	SEC13	IDA		Human	PMID:15146057
Cellular Component	GO:0005765	lysosomal membrane	SEC13	IDA		Human	PMID:28199306
Cellular Component	GO:0005635	nuclear envelope	SEC13	IDA		Human	PMID:15146057
Cellular Component	GO:0005635	nuclear envelope	SEC13	IDA		Human	PMID:24315095
Cellular Component	GO:0005643	nuclear pore	Sec13	IDA		Rat	PMID:10087256|RGD:10413910
Cellular Component	GO:0031080	nuclear pore outer ring	SEC13	IDA		Human	PMID:17360435
Cellular Component	GO:0005654	nucleoplasm	SEC13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	Sec13	IDA		Rat	PMID:22303004|RGD:10413913
Biological Process	GO:0051216	cartilage development	sec13	IMP	ZFIN:ZDB-MRPHLNO-090206-3,ZFIN:ZDB-MRPHLNO-090206-4	Zfish	PMID:18713835
Biological Process	GO:0090110	COPII-coated vesicle cargo loading	SEC13	IDA		Human	PMID:17499046
Biological Process	GO:0090110	COPII-coated vesicle cargo loading	SEC13	IDA		Human	PMID:18843296
Biological Process	GO:0055123	digestive system development	sec13	IMP	ZFIN:ZDB-GENO-120801-2	Zfish	PMID:22609279
Biological Process	GO:0055123	digestive system development	sec13	IMP	ZFIN:ZDB-MRPHLNO-120731-1	Zfish	PMID:22609279
Biological Process	GO:0007029	endoplasmic reticulum organization	sec13	IMP	ZFIN:ZDB-GENO-120801-2	Zfish	PMID:22609279
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	Sec13	IDA		Rat	PMID:15728249|RGD:8554056
Biological Process	GO:0070278	extracellular matrix constituent secretion	sec13	IMP	ZFIN:ZDB-MRPHLNO-090206-3,ZFIN:ZDB-MRPHLNO-090206-4	Zfish	PMID:18713835
Biological Process	GO:0042462	eye photoreceptor cell development	sec13	IMP	ZFIN:ZDB-MRPHLNO-090206-4	Zfish	PMID:23519012
Biological Process	GO:0001889	liver development	sec13	IMP	ZFIN:ZDB-MRPHLNO-120731-1	Zfish	PMID:22609279
Biological Process	GO:0001889	liver development	sec13	IMP	ZFIN:ZDB-GENO-120801-2	Zfish	PMID:22609279
Biological Process	GO:0036372	opsin transport	sec13	IMP	ZFIN:ZDB-MRPHLNO-090206-4	Zfish	PMID:23519012
Biological Process	GO:0032008	positive regulation of TOR signaling	SEC13	IMP		Human	PMID:23723238
Biological Process	GO:0032527	protein exit from endoplasmic reticulum	Sec13	IMP		Mouse	MGI:MGI:5807293|PMID:27354378
Biological Process	GO:0010842	retina layer formation	sec13	IMP	ZFIN:ZDB-MRPHLNO-090206-4	Zfish	PMID:23519012

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern