Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SECISBP2
  • Mouse genes Secisbp2
  • Rat genes Secisbp2
  • Zfish genes secisbp2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Secisbp2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	SECISBP2	EXP		Human	PMID:19467292
Molecular Function	GO:0003730	mRNA 3'-UTR binding	SECISBP2	IDA		Human	PMID:16962588
Molecular Function	GO:0003730	mRNA 3'-UTR binding	SECISBP2	IDA		Human	PMID:17332014
Molecular Function	GO:0003730	mRNA 3'-UTR binding	Secisbp2	IDA		Rat	PMID:11238886|RGD:628439
Molecular Function	GO:0005515	protein binding	SECISBP2	IPI	UniProtKB:Q08379	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SECISBP2	IPI	UniProtKB:Q92567-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SECISBP2	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Secisbp2	IPI	PR:Q9JHW4	Mouse	PMID:22992746
Molecular Function	GO:0043021	ribonucleoprotein complex binding	Secisbp2	IDA		Mouse	PMID:22992746
Molecular Function	GO:0003723	RNA binding	SECISBP2	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	Secisbp2	IDA		Rat	PMID:10637234|RGD:633967
Molecular Function	GO:0035368	selenocysteine insertion sequence binding	Secisbp2	IDA		Mouse	PMID:22992746
Molecular Function	GO:0035368	selenocysteine insertion sequence binding	Secisbp2	IDA		Rat	PMID:15821744|RGD:11038818
Cellular Component	GO:0005739	mitochondrion	Secisbp2	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005654	nucleoplasm	SECISBP2	IDA		Human	GO_REF:0000052
Cellular Component	GO:1990904	ribonucleoprotein complex	Secisbp2	IDA		Mouse	PMID:22992746
Biological Process	GO:0021884	forebrain neuron development	Secisbp2	IMP	MGI:MGI:2181426,MGI:MGI:5583885	Mouse	PMID:24844465
Biological Process	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Secisbp2	IMP	MGI:MGI:4433050	Mouse	PMID:24274065
Biological Process	GO:1904571	positive regulation of selenocysteine incorporation	Secisbp2	IDA		Rat	PMID:15821744|RGD:11038818
Biological Process	GO:0001514	selenocysteine incorporation	Secisbp2	IMP	MGI:MGI:2181426,MGI:MGI:5583885	Mouse	PMID:24844465
Biological Process	GO:0001514	selenocysteine incorporation	Secisbp2	IMP	MGI:MGI:4433050	Mouse	PMID:24274065
Biological Process	GO:0021756	striatum development	Secisbp2	IMP	MGI:MGI:2181426,MGI:MGI:5583885	Mouse	PMID:24844465

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern