Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Sema3d

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SEMA3D
- Mouse genes Sema3d
- Rat genes Sema3d
- Zfish genes sema3d
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sema3d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0038191	neuropilin binding	sema3d	IDA		Zfish	PMID:31349972
Cellular Component	GO:0005615	extracellular space	Sema3d	HDA		Mouse	MGI:MGI:5640941\|PMID:24006456
Biological Process	GO:0007411	axon guidance	sema3d	IMP	ZFIN:ZDB-MRPHLNO-050513-5	Zfish	PMID:17251263
Biological Process	GO:0007411	axon guidance	sema3d	IMP		Zfish	PMID:15456815
Biological Process	GO:0007413	axonal fasciculation	sema3d	IMP		Zfish	PMID:15456815
Biological Process	GO:0043534	blood vessel endothelial cell migration	sema3d	IMP	ZFIN:ZDB-GENO-170224-1	Zfish	PMID:27799363
Biological Process	GO:0043534	blood vessel endothelial cell migration	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:27799363
Biological Process	GO:0010002	cardioblast differentiation	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0010002	cardioblast differentiation	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789
Biological Process	GO:0051216	cartilage development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0051216	cartilage development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789
Biological Process	GO:0021534	cell proliferation in hindbrain	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16971468
Biological Process	GO:0021534	cell proliferation in hindbrain	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16971468
Biological Process	GO:0035050	embryonic heart tube development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0035050	embryonic heart tube development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789
Biological Process	GO:0060272	embryonic skeletal joint morphogenesis	sema3d	IMP	ZFIN:ZDB-MRPHLNO-120627-1	Zfish	PMID:22542598
Biological Process	GO:0048484	enteric nervous system development	sema3d	IGI	ZFIN:ZDB-MRPHLNO-051128-4,ZFIN:ZDB-MRPHLNO-081020-2	Zfish	PMID:25839327
Biological Process	GO:0048484	enteric nervous system development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:25839327
Biological Process	GO:0031101	fin regeneration	sema3d	IGI	ZFIN:ZDB-GENE-050302-175	Zfish	PMID:26828861
Biological Process	GO:0031101	fin regeneration	sema3d	IMP	ZFIN:ZDB-MRPHLNO-120627-1	Zfish	PMID:22542598
Biological Process	GO:0031101	fin regeneration	sema3d	IMP	ZFIN:ZDB-MRPHLNO-120627-1	Zfish	PMID:26828861
Biological Process	GO:0007508	larval heart development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0007508	larval heart development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789
Biological Process	GO:0014032	neural crest cell development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16971468
Biological Process	GO:0014032	neural crest cell development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-061129-1	Zfish	PMID:16971468
Biological Process	GO:0014032	neural crest cell development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16971468
Biological Process	GO:0014033	neural crest cell differentiation	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789
Biological Process	GO:0014033	neural crest cell differentiation	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0001755	neural crest cell migration	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0071678	olfactory bulb axon guidance	sema3d	IMP	ZFIN:ZDB-GENO-200504-5	Zfish	PMID:26732841
Biological Process	GO:0071678	olfactory bulb axon guidance	sema3d	IGI	ZFIN:ZDB-GENE-040611-3	Zfish	PMID:26732841
Biological Process	GO:0007422	peripheral nervous system development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16280593
Biological Process	GO:0007422	peripheral nervous system development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16280593
Biological Process	GO:0048936	peripheral nervous system neuron axonogenesis	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:21108318
Biological Process	GO:0048936	peripheral nervous system neuron axonogenesis	sema3d	IGI	ZFIN:ZDB-MRPHLNO-051128-3,ZFIN:ZDB-MRPHLNO-110107-1	Zfish	PMID:21108318
Biological Process	GO:0030516	regulation of axon extension	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16280593
Biological Process	GO:0030516	regulation of axon extension	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16280593
Biological Process	GO:0051726	regulation of cell cycle	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16971468
Biological Process	GO:0051726	regulation of cell cycle	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16971468
Biological Process	GO:0031290	retinal ganglion cell axon guidance	sema3d	IMP		Zfish	PMID:14724229
Biological Process	GO:0031290	retinal ganglion cell axon guidance	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:14724229
Biological Process	GO:0031290	retinal ganglion cell axon guidance	sema3d	IMP		Zfish	PMID:16467361
Biological Process	GO:0031290	retinal ganglion cell axon guidance	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16467361
Biological Process	GO:0048538	thymus development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-3	Zfish	PMID:16860789
Biological Process	GO:0048538	thymus development	sema3d	IMP	ZFIN:ZDB-MRPHLNO-051128-4	Zfish	PMID:16860789

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.