Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SEMA3F
  • Mouse genes Sema3f
  • Rat genes Sema3f
  • Zfish genes sema3fa,sema3fb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sema3f

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0045499	chemorepellent activity	SEMA3F	IDA		Human	PMID:15814794
Molecular Function	GO:0045499	chemorepellent activity	Sema3f	IDA		Mouse	PMID:12435358
Molecular Function	GO:0045499	chemorepellent activity	Sema3f	IDA		Mouse	PMID:16319111
Molecular Function	GO:0045499	chemorepellent activity	Sema3f	IDA		Mouse	PMID:11683995
Molecular Function	GO:0038191	neuropilin binding	sema3fa	IDA		Zfish	PMID:31349972
Molecular Function	GO:0038191	neuropilin binding	sema3fb	IDA		Zfish	PMID:31349972
Cellular Component	GO:0005615	extracellular space	Sema3f	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Cellular Component	GO:0098978	glutamatergic synapse	Sema3f	IMP		Mouse	PMID:20010807
Cellular Component	GO:0098978	glutamatergic synapse	Sema3f	IDA		Mouse	PMID:20010807
Cellular Component	GO:0098978	glutamatergic synapse	Sema3f	IDA		Mouse	PMID:25143608
Cellular Component	GO:0098978	glutamatergic synapse	Sema3f	IMP		Mouse	PMID:25143608
Biological Process	GO:0048846	axon extension involved in axon guidance	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0048846	axon extension involved in axon guidance	Sema3f	IDA		Mouse	PMID:9753685
Biological Process	GO:0048846	axon extension involved in axon guidance	Sema3f	IGI	MGI:MGI:107683	Mouse	PMID:11683995
Biological Process	GO:0007411	axon guidance	SEMA3F	IDA		Human	PMID:15814794
Biological Process	GO:0007411	axon guidance	Sema3f	IDA		Mouse	PMID:12435358
Biological Process	GO:0021785	branchiomotor neuron axon guidance	Sema3f	IMP		Mouse	MGI:MGI:3822054|PMID:18804103
Biological Process	GO:0021612	facial nerve structural organization	Sema3f	IMP		Mouse	MGI:MGI:3822054|PMID:18804103
Biological Process	GO:0050919	negative chemotaxis	Sema3f	IGI	MGI:MGI:107683	Mouse	PMID:11683995
Biological Process	GO:0050919	negative chemotaxis	Sema3f	IDA		Mouse	PMID:16319111
Biological Process	GO:0050919	negative chemotaxis	Sema3f	IGI	MGI:MGI:1100492	Mouse	PMID:16319111
Biological Process	GO:0048843	negative regulation of axon extension involved in axon guidance	Sema3f	IDA		Mouse	PMID:9753685
Biological Process	GO:0048843	negative regulation of axon extension involved in axon guidance	Sema3f	IGI	MGI:MGI:107683	Mouse	PMID:11683995
Biological Process	GO:0021675	nerve development	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0001755	neural crest cell migration	sema3fa	IGI	ZFIN:ZDB-GENO-071026-2,ZFIN:ZDB-MRPHLNO-060705-7	Zfish	PMID:15882579
Biological Process	GO:1901166	neural crest cell migration involved in autonomic nervous system development	Sema3f	IMP		Mouse	MGI:MGI:3848580|PMID:19386662
Biological Process	GO:0097350	neutrophil clearance	sema3fa	IGI	ZFIN:ZDB-MRPHLNO-060705-7,ZFIN:ZDB-MRPHLNO-210111-1	Zfish	PMID:32191647
Biological Process	GO:0097350	neutrophil clearance	sema3fb	IMP	ZFIN:ZDB-MRPHLNO-210111-1	Zfish	PMID:32191647
Biological Process	GO:0097350	neutrophil clearance	sema3fb	IGI	ZFIN:ZDB-MRPHLNO-060705-7,ZFIN:ZDB-MRPHLNO-210111-1	Zfish	PMID:32191647
Biological Process	GO:0097350	neutrophil clearance	sema3fa	IMP	ZFIN:ZDB-MRPHLNO-060705-7	Zfish	PMID:32191647
Biological Process	GO:0099175	regulation of postsynapse organization	Sema3f	IDA		Mouse	PMID:20010807
Biological Process	GO:0099175	regulation of postsynapse organization	Sema3f	IMP		Mouse	PMID:20010807
Biological Process	GO:0099175	regulation of postsynapse organization	Sema3f	IDA		Mouse	PMID:25143608
Biological Process	GO:0099175	regulation of postsynapse organization	Sema3f	IMP		Mouse	PMID:25143608
Biological Process	GO:1902287	semaphorin-plexin signaling pathway involved in axon guidance	Sema3f	IMP		Mouse	MGI:MGI:3822054|PMID:18804103
Biological Process	GO:1902285	semaphorin-plexin signaling pathway involved in neuron projection guidance	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0061549	sympathetic ganglion development	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0097490	sympathetic neuron projection extension	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0097491	sympathetic neuron projection guidance	Sema3f	IMP		Mouse	MGI:MGI:5437554|PMID:22790009
Biological Process	GO:0021637	trigeminal nerve structural organization	Sema3f	IMP		Mouse	MGI:MGI:3822054|PMID:18804103
Biological Process	GO:0036484	trunk neural crest cell migration	Sema3f	IMP	MGI:MGI:2670663	Mouse	PMID:16319111
Biological Process	GO:0036486	ventral trunk neural crest cell migration	Sema3f	IMP		Mouse	MGI:MGI:3848580|PMID:19386662

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern