Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SF3A1
  • Mouse genes Sf3a1
  • Rat genes Sf3a1
  • Zfish genes sf3a1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sf3a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:P08047	Human	PMID:10976766
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q12874	Human	PMID:17098193
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q15428	Human	PMID:17332742
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q9BXW4	Human	PMID:20562859
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:O75400	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:P98175	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q12874	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q15428	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q15637	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:P52298,UniProtKB:Q09161	Human	PMID:23793891
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q15637	Human	PMID:26420826
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q12874	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q12874	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	SF3A1	IPI	UniProtKB:Q15428	Human	PMID:30021884
Molecular Function	GO:0003723	RNA binding	SF3A1	IDA		Human	PMID:10882114
Molecular Function	GO:0003723	RNA binding	SF3A1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SF3A1	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SF3A1	IDA		Human	PMID:11991638
Cellular Component	GO:0016607	nuclear speck	SF3A1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SF3A1	IDA		Human	PMID:21349847
Cellular Component	GO:0005654	nucleoplasm	SF3A1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SF3A1	IDA		Human	PMID:10882114
Cellular Component	GO:0005634	nucleus	SF3A1	IDA		Human	PMID:21349847
Cellular Component	GO:0005634	nucleus	SF3A1	IDA		Human	PMID:29360106
Cellular Component	GO:0005681	spliceosomal complex	SF3A1	IDA		Human	PMID:9731529
Cellular Component	GO:0005686	U2 snRNP	SF3A1	IDA		Human	PMID:10882114
Cellular Component	GO:0005686	U2 snRNP	SF3A1	IDA		Human	PMID:11533230
Cellular Component	GO:0005686	U2 snRNP	SF3A1	IDA		Human	PMID:23793891
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SF3A1	IDA		Human	PMID:10882114
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SF3A1	IDA		Human	PMID:29360106
Cellular Component	GO:0071004	U2-type prespliceosome	SF3A1	IDA		Human	PMID:10882114
Cellular Component	GO:0005684	U2-type spliceosomal complex	SF3A1	IPI		Human	PMID:10882114
Cellular Component	GO:0005684	U2-type spliceosomal complex	SF3A1	IDA		Human	PMID:10882114
Biological Process	GO:0006397	mRNA processing	SF3A1	IMP		Human	PMID:15647371
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3A1	IDA		Human	PMID:10882114
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3A1	IDA		Human	PMID:29360106
Biological Process	GO:1903241	U2-type prespliceosome assembly	SF3A1	IDA		Human	PMID:10882114
Biological Process	GO:1903241	U2-type prespliceosome assembly	SF3A1	IDA		Human	PMID:11533230

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern