Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SF3B3
  • Mouse genes Sf3b3
  • Rat genes Sf3b3
  • Zfish genes sf3b3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sf3b3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:Q8IVD9	Human	PMID:25036637
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:O75533	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:Q7RTV0	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:Q9BWJ5	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:O00291	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:O60260-5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:P00441	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:P40337-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SF3B3	IPI	UniProtKB:Q13148	Human	PMID:32814053
Molecular Function	GO:0044877	protein-containing complex binding	SF3B3	IPI	ComplexPortal:CPX-900	Human	PMID:11564863
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SF3B3	IDA		Human	PMID:11991638
Cellular Component	GO:0005730	nucleolus	SF3B3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SF3B3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SF3B3	IDA		Human	PMID:27720643
Cellular Component	GO:0005634	nucleus	SF3B3	IDA		Human	PMID:28541300
Cellular Component	GO:0005634	nucleus	SF3B3	IDA		Human	PMID:28781166
Cellular Component	GO:0005634	nucleus	SF3B3	IDA		Human	PMID:29360106
Cellular Component	GO:0005689	U12-type spliceosomal complex	SF3B3	IDA		Human	PMID:15146077
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SF3B3	IDA		Human	PMID:28781166
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SF3B3	IDA		Human	PMID:29360106
Cellular Component	GO:0005684	U2-type spliceosomal complex	SF3B3	IPI		Human	PMID:27720643
Biological Process	GO:0035521	monoubiquitinated histone deubiquitination	SF3B3	IDA		Human	PMID:18206972
Biological Process	GO:0035522	monoubiquitinated histone H2A deubiquitination	SF3B3	IDA		Human	PMID:18206972
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B3	IDA		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B3	IDA		Human	PMID:28781166
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B3	IDA		Human	PMID:29360106
Biological Process	GO:0042177	negative regulation of protein catabolic process	SF3B3	IDA		Human	PMID:23951410

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern