Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SF3B4
  • Mouse genes Sf3b4
  • Rat genes Sf3b4
  • Zfish genes sf3b4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sf3b4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O43639	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O75177	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P45984	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q13435	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9Y4C2	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P62993	Human	PMID:17474147
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P42685	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9Y4C2	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P62993	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O75934	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P98175	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q13435	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q15029	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q6P2Q9	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BRX9	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BUJ2	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:E9PPJ0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O43639	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O75177	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O94855	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O95817	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P42685	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P45984	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P57075	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q0VDC6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q14498	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q2TBE0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q8TBK6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q96T49	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BUJ2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9H7H0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9UBY9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9UQB8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9Y4C2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9Y5A7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q13435	Human	PMID:25737013
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q6P2P2	Human	PMID:25737013
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P98175	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q13435	Human	PMID:27905398
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9H7H0	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q96T49	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O43639	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O75177-5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:O95817	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P17036	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P45984	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P47897	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:P98175	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q08117-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q13435	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q2TBE0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q92734	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q96MX3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BTL3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BUL9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9BUZ4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SF3B4	IPI	UniProtKB:Q9Y4C2-2	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	SF3B4	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SF3B4	HDA		Human	PMID:22681889
Molecular Function	GO:1990935	splicing factor binding	SF3B4	IDA		Human	PMID:27720643
Molecular Function	GO:1990935	splicing factor binding	SF3B4	IDA		Human	PMID:28541300
Cellular Component	GO:0005634	nucleus	SF3B4	IDA		Human	PMID:27720643
Cellular Component	GO:0005634	nucleus	SF3B4	IDA		Human	PMID:28541300
Cellular Component	GO:0005634	nucleus	SF3B4	IDA		Human	PMID:29360106
Cellular Component	GO:0005681	spliceosomal complex	SF3B4	IDA		Human	PMID:9731529
Cellular Component	GO:0005689	U12-type spliceosomal complex	SF3B4	IDA		Human	PMID:15146077
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SF3B4	IDA		Human	PMID:29360106
Cellular Component	GO:0005684	U2-type spliceosomal complex	SF3B4	IPI		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B4	IDA		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B4	IDA		Human	PMID:29360106
Biological Process	GO:0048026	positive regulation of mRNA splicing, via spliceosome	Sf3b4	IMP		Mouse	PMID:23636947

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern