Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SHOC1
  • Mouse genes Shoc1
  • Rat genes Shoc1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Shoc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016887	ATP hydrolysis activity	SHOC1	IDA		Human	PMID:29742103
Molecular Function	GO:0005515	protein binding	Shoc1	IPI	UniProtKB:Q8IYF3	Mouse	MGI:MGI:6159552|PMID:29742103
Molecular Function	GO:0005515	protein binding	Shoc1	IPI	UniProtKB:Q3KQP7	Mouse	MGI:MGI:6478065|PMID:30746471
Molecular Function	GO:0003697	single-stranded DNA binding	SHOC1	IDA		Human	PMID:29742103
Cellular Component	GO:0005694	chromosome	Shoc1	IDA		Mouse	MGI:MGI:6272683|PMID:30272023
Cellular Component	GO:0005694	chromosome	Shoc1	IDA		Mouse	MGI:MGI:6478065|PMID:30746471
Cellular Component	GO:0000794	condensed nuclear chromosome	Shoc1	IDA		Mouse	MGI:MGI:6159552|PMID:29742103
Biological Process	GO:0007131	reciprocal meiotic recombination	Shoc1	IMP		Mouse	MGI:MGI:6272683|PMID:30272023
Biological Process	GO:0000712	resolution of meiotic recombination intermediates	Shoc1	IMP		Mouse	MGI:MGI:6159552|PMID:29742103
Biological Process	GO:0007130	synaptonemal complex assembly	Shoc1	IMP		Mouse	MGI:MGI:7387164|PMID:35485979

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern