Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SHPK
  • Mouse genes Shpk
  • Rat genes Shpk
  • Zfish genes shpk
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Shpk

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0050277	sedoheptulokinase activity	SHPK	IDA		Human	PMID:19413330
Molecular Function	GO:0050277	sedoheptulokinase activity	Shpk	IDA		Mouse	MGI:MGI:5466485|PMID:19413330
Molecular Function	GO:0050277	sedoheptulokinase activity	Shpk	IDA		Mouse	MGI:MGI:3817347|PMID:18775706
Molecular Function	GO:0050277	sedoheptulokinase activity	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Cellular Component	GO:0005737	cytoplasm	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0005975	carbohydrate metabolic process	SHPK	IDA		Human	PMID:19413330
Biological Process	GO:0005975	carbohydrate metabolic process	Shpk	IDA		Mouse	MGI:MGI:3817347|PMID:18775706
Biological Process	GO:0005975	carbohydrate metabolic process	Shpk	IDA		Mouse	MGI:MGI:5466485|PMID:19413330
Biological Process	GO:0005975	carbohydrate metabolic process	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0035963	cellular response to interleukin-13	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0071353	cellular response to interleukin-4	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0071222	cellular response to lipopolysaccharide	SHPK	IDA		Human	PMID:22682222
Biological Process	GO:0071222	cellular response to lipopolysaccharide	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0009052	pentose-phosphate shunt, non-oxidative branch	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0016310	phosphorylation	SHPK	IDA		Human	PMID:19413330
Biological Process	GO:0016310	phosphorylation	Shpk	IDA		Mouse	MGI:MGI:5466485|PMID:19413330
Biological Process	GO:0050727	regulation of inflammatory response	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222
Biological Process	GO:0043030	regulation of macrophage activation	Shpk	IDA		Mouse	MGI:MGI:5428058|PMID:22682222

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern