Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMARCB1
  • Mouse genes Smarcb1
  • Rat genes Smarcb1
  • Zfish genes smarcb1a,smarcb1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcb1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	SMARCB1	IDA		Human	PMID:26073604
Molecular Function	GO:0042802	identical protein binding	SMARCB1	IPI	UniProtKB:Q12824	Human	PMID:27229929
Molecular Function	GO:0042802	identical protein binding	SMARCB1	IPI	UniProtKB:Q12824	Human	PMID:30108113
Molecular Function	GO:0031492	nucleosomal DNA binding	SMARCB1	HDA		Human	PMID:16217013
Molecular Function	GO:0002039	p53 binding	SMARCB1	IPI	UniProtKB:P04637	Human	PMID:11950834
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:10078207
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:12368262
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P04585:PRO_0000042447	Human	PMID:14963118
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:15985610
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q68CP9	Human	PMID:15985610
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P04326	Human	PMID:16601680
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:16687403
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P28033	Human	PMID:20111005
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P27797	Human	PMID:21900206
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:22368283
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:23540691
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q8K1P7	Human	PMID:23540691
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q03468	Human	PMID:24874740
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q68CP9	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P08670	Human	PMID:27229929
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P14136	Human	PMID:27229929
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P27797	Human	PMID:30108113
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:30108113
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q68CP9	Human	PMID:30108113
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:O60814	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P62805	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P68431	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q68CP9	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q6FI13	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:G5E9A7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:O14656-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P01112	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P06396	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P08670	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P16284	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P19404	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P22607	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P50570-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51608	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q16637	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q53GS7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q7Z699	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q9Y649	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:P51532	Human	PMID:34591612
Molecular Function	GO:0005515	protein binding	SMARCB1	IPI	UniProtKB:Q68CP9	Human	PMID:34591612
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	UniProtKB:Q8BVN9	Mouse	MGI:MGI:3655410|PMID:16787967
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	UniProtKB:P97496	Mouse	MGI:MGI:3808057|PMID:17255092
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	PR:Q3TKT4	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	PR:O54941	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	PR:Q810L3	Mouse	PMID:22285184
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	MGI:MGI:1935147	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	PR:P97496	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	PR:A2BH40	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcb1	IPI	RGD:1597704	Rat	PMID:8895581|RGD:8553245
Molecular Function	GO:0001164	RNA polymerase I core promoter sequence-specific DNA binding	SMARCB1	IMP		Human	PMID:22368283
Molecular Function	GO:0030957	Tat protein binding	SMARCB1	IPI	UniProtKB:P04608	Human	PMID:16687403
Molecular Function	GO:0003713	transcription coactivator activity	SMARCB1	IMP		Human	PMID:16687403
Cellular Component	GO:0000785	chromatin	SMARCB1	HDA		Human	PMID:16217013
Cellular Component	GO:0000785	chromatin	Smarcb1	IDA		Rat	PMID:29398003|RGD:127285654
Cellular Component	GO:0001650	fibrillar center	SMARCB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0043073	germ cell nucleus	Smarcb1	IDA		Mouse	PMID:16787967
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	SMARCB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0071565	nBAF complex	Smarcb1	IDA		Mouse	MGI:MGI:3775125|PMID:17640523
Cellular Component	GO:0071564	npBAF complex	Smarcb1	IDA		Mouse	MGI:MGI:3775125|PMID:17640523
Cellular Component	GO:0005730	nucleolus	SMARCB1	IDA		Human	PMID:22368283
Cellular Component	GO:0005654	nucleoplasm	SMARCB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SMARCB1	IDA		Human	PMID:11430827
Cellular Component	GO:0005634	nucleus	SMARCB1	IDA		Human	PMID:22368283
Cellular Component	GO:0005634	nucleus	Smarcb1	IDA		Mouse	PMID:16787967
Cellular Component	GO:0005634	nucleus	Smarcb1	IDA		Rat	PMID:8895581|RGD:8553245
Cellular Component	GO:0032991	protein-containing complex	SMARCB1	HDA		Human	PMID:16217013
Cellular Component	GO:0016514	SWI/SNF complex	SMARCB1	IDA		Human	PMID:11078522
Cellular Component	GO:0016514	SWI/SNF complex	SMARCB1	IDA		Human	PMID:8804307
Cellular Component	GO:0016514	SWI/SNF complex	SMARCB1	IDA		Human	PMID:8895581
Cellular Component	GO:0016514	SWI/SNF complex	Smarcb1	IDA		Mouse	PMID:16287714
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcb1	IDA		Mouse	PMID:24335282
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcb1	IDA		Mouse	PMID:12368262
Cellular Component	GO:0001741	XY body	Smarcb1	IDA		Mouse	PMID:16787967
Biological Process	GO:0001824	blastocyst development	Smarcb1	IMP	MGI:MGI:2388033	Mouse	PMID:11313485
Biological Process	GO:0001824	blastocyst development	Smarcb1	IMP	MGI:MGI:2387974	Mouse	PMID:11263494
Biological Process	GO:0001835	blastocyst hatching	Smarcb1	IMP	MGI:MGI:2388033	Mouse	PMID:11313485
Biological Process	GO:0001835	blastocyst hatching	Smarcb1	IMP	MGI:MGI:2387974	Mouse	PMID:11263494
Biological Process	GO:0006338	chromatin remodeling	SMARCB1	IDA		Human	PMID:11726552
Biological Process	GO:0006338	chromatin remodeling	SMARCB1	HDA		Human	PMID:16217013
Biological Process	GO:0006338	chromatin remodeling	SMARCB1	IMP		Human	PMID:22368283
Biological Process	GO:0070365	hepatocyte differentiation	Smarcb1	IMP	MGI:MGI:2387974	Mouse	PMID:16138077
Biological Process	GO:0008285	negative regulation of cell population proliferation	Smarcb1	IMP	MGI:MGI:1931875	Mouse	PMID:11095756
Biological Process	GO:0008285	negative regulation of cell population proliferation	Smarcb1	IMP	MGI:MGI:2387974	Mouse	PMID:11263494
Biological Process	GO:0008285	negative regulation of cell population proliferation	Smarcb1	IMP	MGI:MGI:2388033	Mouse	PMID:11313485
Biological Process	GO:0006337	nucleosome disassembly	SMARCB1	IDA		Human	PMID:8895581
Biological Process	GO:0043923	positive regulation by host of viral transcription	SMARCB1	IMP		Human	PMID:16687403
Biological Process	GO:0051091	positive regulation of DNA-binding transcription factor activity	SMARCB1	IDA		Human	PMID:11950834
Biological Process	GO:1902661	positive regulation of glucose mediated signaling pathway	SMARCB1	IDA		Human	PMID:22368283
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	SMARCB1	IDA		Human	PMID:11950834
Biological Process	GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	SMARCB1	IGI	UniProtKB:Q9NWS0	Human	PMID:22368283
Biological Process	GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	SMARCB1	IMP		Human	PMID:22368283
Biological Process	GO:0039692	single stranded viral RNA replication via double stranded DNA intermediate	SMARCB1	IDA		Human	PMID:14963118
Biological Process	GO:0045815	transcription initiation-coupled chromatin remodeling	SMARCB1	IMP		Human	PMID:22368283

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern