Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Smarcc1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SMARCC1
- Mouse genes Smarcc1
- Rat genes Smarcc1
- Zfish genes smarcc1a,smarcc1b
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Smarcc1	IDA		Mouse	PMID:17074803
Molecular Function	GO:0031492	nucleosomal DNA binding	SMARCC1	HDA		Human	PMID:16217013
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:10078207
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96ST3	Human	PMID:11238380
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:12368262
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P06536	Human	PMID:12917342
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:12917342
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:12917342
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:15985610
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:18303029
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:18303029
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P28033	Human	PMID:20111005
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:23540691
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:24421395
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:24434208
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q86X55	Human	PMID:24434208
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:24434208
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:O15162	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P32242	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q6UY14-3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:28420882
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q92785	Human	PMID:28533407
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9NPJ1	Human	PMID:28753627
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P51532	Human	PMID:31759698
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:A8MQ03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:A8MV65-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:O43314-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:O76003	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P27918	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q03431	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q16348	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q3LHN2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q3LI59	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q3LI64	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q3LI66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q3SY46	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q6NVU6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q6PEX3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q6UY14-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q7Z6I5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q8IUC3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q8IWZ5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9BYR6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9BYR7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9BYR8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9H4Y5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9P0T4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9P2M1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q9UHD4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q7Z4V5	Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q92784-2	Human	PMID:32459350
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:Q96GM5	Human	PMID:34591612
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P43694	Human	PMID:35182466
Molecular Function	GO:0005515	protein binding	SMARCC1	IPI	UniProtKB:P24864	Human	PMID:9891079
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	UniProtKB:Q3TKT4\|UniProtKB:Q61466	Mouse	MGI:MGI:5644005\|PMID:24421395
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	UniProtKB:Q3TKT4	Mouse	MGI:MGI:5491971\|PMID:23540691
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	UniProtKB:Q5NCY0	Mouse	MGI:MGI:4866963\|PMID:21095589
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	UniProtKB:Q3TKT4	Mouse	MGI:MGI:5499063\|PMID:23698369
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	UniProtKB:Q3TKT4\|UniProtKB:Q61466\|UniProtKB:Q9Z0H3	Mouse	MGI:MGI:3808057\|PMID:17255092
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	PR:Q9Z0H3	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	PR:O54941	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	PR:Q9WTN3	Mouse	PMID:17074803
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	PR:Q3TKT4	Mouse	PMID:16287714
Molecular Function	GO:0005515	protein binding	Smarcc1	IPI	PR:A2BH40	Mouse	PMID:16287714
Cellular Component	GO:0000785	chromatin	SMARCC1	HDA		Human	PMID:16217013
Cellular Component	GO:0005737	cytoplasm	SMARCC1	IDA		Human	PMID:28753627
Cellular Component	GO:0005737	cytoplasm	smarcc1a	IDA		Zfish	PMID:28753627
Cellular Component	GO:0005622	intracellular anatomical structure	Smarcc1	IDA		Mouse	PMID:11604513
Cellular Component	GO:0001673	male germ cell nucleus	Smarcc1	IDA		Mouse	PMID:16787967
Cellular Component	GO:0071565	nBAF complex	Smarcc1	IDA		Mouse	MGI:MGI:3775125\|PMID:17640523
Cellular Component	GO:0071565	nBAF complex	Smarcc1	IDA		Mouse	PMID:23785148
Cellular Component	GO:0071564	npBAF complex	Smarcc1	IDA		Mouse	MGI:MGI:3775125\|PMID:17640523
Cellular Component	GO:0071564	npBAF complex	Smarcc1	IDA		Mouse	PMID:23785148
Cellular Component	GO:0005654	nucleoplasm	SMARCC1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SMARCC1	IDA		Human	PMID:28753627
Cellular Component	GO:0005634	nucleus	Smarcc1	IDA		Mouse	MGI:MGI:3655410\|PMID:16787967
Cellular Component	GO:0005634	nucleus	smarcc1a	IDA		Zfish	PMID:28753627
Cellular Component	GO:0032991	protein-containing complex	SMARCC1	HDA		Human	PMID:16217013
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC1	IDA		Human	PMID:10078207
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC1	IDA		Human	PMID:11078522
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC1	IDA		Human	PMID:29374058
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC1	IDA		Human	PMID:8804307
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC1	IDA		Human	PMID:8895581
Cellular Component	GO:0016514	SWI/SNF complex	Smarcc1	IDA		Mouse	MGI:MGI:6157116\|PMID:29374058
Cellular Component	GO:0016514	SWI/SNF complex	Smarcc1	IDA		Mouse	PMID:16287714
Cellular Component	GO:0016514	SWI/SNF complex	Smarcc1	IDA		Mouse	PMID:23643363
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcc1	IDA		Mouse	PMID:24335282
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcc1	IDA		Mouse	PMID:12368262
Cellular Component	GO:0001741	XY body	Smarcc1	IDA		Mouse	MGI:MGI:3655410\|PMID:16787967
Biological Process	GO:0009887	animal organ morphogenesis	Smarcc1	IMP	MGI:MGI:2154523	Mouse	PMID:11604513
Biological Process	GO:0006338	chromatin remodeling	SMARCC1	IDA		Human	PMID:10078207
Biological Process	GO:0006338	chromatin remodeling	SMARCC1	IDA		Human	PMID:11018012
Biological Process	GO:0006338	chromatin remodeling	SMARCC1	IDA		Human	PMID:11726552
Biological Process	GO:0006338	chromatin remodeling	SMARCC1	HDA		Human	PMID:16217013
Biological Process	GO:0060216	definitive hemopoiesis	smarcc1a	IMP	ZFIN:ZDB-MRPHLNO-141217-5	Zfish	PMID:24240475
Biological Process	GO:0003007	heart morphogenesis	smarcc1a	IMP	ZFIN:ZDB-MRPHLNO-171009-2	Zfish	PMID:28753627
Biological Process	GO:0003007	heart morphogenesis	smarcc1a	IMP	ZFIN:ZDB-MRPHLNO-171009-1	Zfish	PMID:28753627
Biological Process	GO:0008286	insulin receptor signaling pathway	Smarcc1	IDA		Mouse	PMID:17074803
Biological Process	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Smarcc1	IMP		Mouse	PMID:22285184
Biological Process	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Smarcc1	IDA		Mouse	PMID:22285184
Biological Process	GO:0006337	nucleosome disassembly	SMARCC1	IDA		Human	PMID:8895581
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	SMARCC1	IDA		Human	PMID:11018012
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Smarcc1	IGI	MGI:MGI:107606	Mouse	PMID:17074803
Biological Process	GO:0030850	prostate gland development	Smarcc1	IEP		Rat	PMID:15923603\|RGD:9586354

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.