Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMARCD2
  • Mouse genes Smarcd2
  • Rat genes Smarcd2
  • Zfish genes smarcd2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcd2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031492	nucleosomal DNA binding	SMARCD2	HDA		Human	PMID:16217013
Molecular Function	GO:0005515	protein binding	SMARCD2	IPI	UniProtKB:Q9H9P5	Human	PMID:20148946
Molecular Function	GO:0005515	protein binding	SMARCD2	IPI	UniProtKB:O14497	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	SMARCD2	IPI	UniProtKB:O14497	Human	PMID:34591612
Cellular Component	GO:0000785	chromatin	SMARCD2	HDA		Human	PMID:16217013
Cellular Component	GO:0005654	nucleoplasm	SMARCD2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	SMARCD2	HDA		Human	PMID:16217013
Cellular Component	GO:0016514	SWI/SNF complex	SMARCD2	IDA		Human	PMID:8804307
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcd2	IDA		Mouse	PMID:24335282
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcd2	IDA		Mouse	PMID:12368262
Biological Process	GO:0006338	chromatin remodeling	SMARCD2	IDA		Human	PMID:11726552
Biological Process	GO:0006338	chromatin remodeling	SMARCD2	HDA		Human	PMID:16217013
Biological Process	GO:0002244	hematopoietic progenitor cell differentiation	smarcd2	IMP		Zfish	PMID:24240475
Biological Process	GO:0030223	neutrophil differentiation	smarcd2	IMP	ZFIN:ZDB-MRPHLNO-141230-12	Zfish	PMID:28369036
Biological Process	GO:0030223	neutrophil differentiation	smarcd2	IMP	ZFIN:ZDB-GENO-170614-3	Zfish	PMID:28369036
Biological Process	GO:0030223	neutrophil differentiation	smarcd2	IMP	ZFIN:ZDB-MRPHLNO-170613-1	Zfish	PMID:28369036
Biological Process	GO:0006337	nucleosome disassembly	SMARCD2	IDA		Human	PMID:8895581

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern