Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMPX
  • Mouse genes Smpx
  • Rat genes Smpx
  • Zfish genes smpx
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smpx

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0043292	contractile fiber	Smpx	IDA		Mouse	PMID:11381084
Cellular Component	GO:0043034	costamere	Smpx	IDA		Mouse	PMID:11381084
Cellular Component	GO:0005737	cytoplasm	Smpx	IDA		Mouse	PMID:11381084
Cellular Component	GO:0005737	cytoplasm	Smpx	IDA		Mouse	PMID:11401441
Cellular Component	GO:0031430	M band	Smpx	IDA		Mouse	PMID:11381084
Cellular Component	GO:0005927	muscle tendon junction	Smpx	IDA		Mouse	PMID:11381084
Cellular Component	GO:0005634	nucleus	Smpx	IDA		Mouse	PMID:11401441
Biological Process	GO:0048839	inner ear development	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-2	Zfish	PMID:34204426
Biological Process	GO:0048839	inner ear development	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-1	Zfish	PMID:34204426
Biological Process	GO:1905790	regulation of mechanosensory behavior	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-1	Zfish	PMID:34204426
Biological Process	GO:1905790	regulation of mechanosensory behavior	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-2	Zfish	PMID:34204426
Biological Process	GO:0048741	skeletal muscle fiber development	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-1	Zfish	PMID:34204426
Biological Process	GO:0048741	skeletal muscle fiber development	smpx	IMP	ZFIN:ZDB-MRPHLNO-220217-2	Zfish	PMID:34204426

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern