Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMTNL1
  • Mouse genes Smtnl1
  • Rat genes Smtnl1
  • Zfish genes smtnl1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smtnl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005516	calmodulin binding	Smtnl1	IPI	UniProtKB:P62149	Mouse	MGI:MGI:5882885|PMID:18477568
Molecular Function	GO:0051401	CH domain binding	Smtnl1	IPI	UniProtKB:Q99LM3	Mouse	MGI:MGI:5882874|PMID:22424482
Molecular Function	GO:0097718	disordered domain specific binding	Smtnl1	IPI	UniProtKB:Q99LM3	Mouse	MGI:MGI:5882874|PMID:22424482
Molecular Function	GO:0005515	protein binding	Smtnl1	IPI	UniProtKB:P04268	Mouse	MGI:MGI:4822082|PMID:20627103
Molecular Function	GO:0008157	protein phosphatase 1 binding	Smtnl1	IPI	UniProtKB:Q9DBR7	Mouse	MGI:MGI:4844228|PMID:20634291
Molecular Function	GO:0043621	protein self-association	Smtnl1	IDA		Mouse	MGI:MGI:5882874|PMID:22424482
Molecular Function	GO:0005523	tropomyosin binding	Smtnl1	IPI	UniProtKB:P04268,UniProtKB:P19352	Mouse	MGI:MGI:5882874|PMID:22424482
Cellular Component	GO:0043292	contractile fiber	SMTNL1	IDA		Human	PMID:20634291
Cellular Component	GO:0043292	contractile fiber	Smtnl1	IDA		Mouse	MGI:MGI:4844228|PMID:20634291
Cellular Component	GO:0043292	contractile fiber	Smtnl1	IDA		Mouse	PMID:18310078
Cellular Component	GO:0005737	cytoplasm	Smtnl1	IDA		Mouse	MGI:MGI:4844228|PMID:20634291
Cellular Component	GO:0031674	I band	Smtnl1	IDA		Mouse	PMID:18310078
Cellular Component	GO:0031430	M band	Smtnl1	IDA		Mouse	PMID:18310078
Cellular Component	GO:0005634	nucleus	Smtnl1	IDA		Mouse	MGI:MGI:4844228|PMID:20634291
Biological Process	GO:0048644	muscle organ morphogenesis	Smtnl1	IMP	MGI:MGI:3796616	Mouse	PMID:18310078
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Smtnl1	IDA		Mouse	MGI:MGI:5292300|PMID:21771785
Biological Process	GO:0018105	peptidyl-serine phosphorylation	Smtnl1	IDA		Mouse	PMID:18310078
Biological Process	GO:0045907	positive regulation of vasoconstriction	Smtnl1	IMP		Mouse	MGI:MGI:4844228|PMID:20634291
Biological Process	GO:0045907	positive regulation of vasoconstriction	Smtnl1	IMP	MGI:MGI:3796616	Mouse	PMID:18310078
Biological Process	GO:0014823	response to activity	Smtnl1	IMP	MGI:MGI:3796616	Mouse	PMID:18310078
Biological Process	GO:0009410	response to xenobiotic stimulus	Smtnl1	IDA		Mouse	PMID:18310078
Biological Process	GO:0042310	vasoconstriction	Smtnl1	IMP	MGI:MGI:3796616	Mouse	PMID:18310078

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern