Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SND1
  • Mouse genes Snd1
  • Rat genes Snd1
  • Zfish genes snd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0045296	cadherin binding	SND1	HDA		Human	PMID:25468996
Molecular Function	GO:0004519	endonuclease activity	SND1	IDA		Human	PMID:18453631
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q13283	Human	PMID:20643132
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q96J94	Human	PMID:20937909
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q9R0N3	Human	PMID:24882364
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q86UE4	Human	PMID:24981741
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q86UE4	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q8NDV7,UniProtKB:Q9UKV8,UniProtKB:Q9UPY3	Human	PMID:28546213
Molecular Function	GO:0005515	protein binding	SND1	IPI	UniProtKB:Q86UE4	Human	PMID:34591612
Molecular Function	GO:0005515	protein binding	Snd1	IPI	UniProtKB:Q80WJ7	Mouse	MGI:MGI:5588616|PMID:24981741
Molecular Function	GO:0005515	protein binding	Snd1	IPI	PR:Q9JMB7	Mouse	PMID:20937909
Molecular Function	GO:0005515	protein binding	Snd1	IPI	UniProtKB:Q9QZ81	Rat	PMID:24882364|RGD:8693368
Molecular Function	GO:0005515	protein binding	Snd1	IPI	UniProtKB:Q9R0N3	Rat	PMID:24882364|RGD:8693368
Molecular Function	GO:1905172	RISC complex binding	SND1	IDA		Human	PMID:28546213
Molecular Function	GO:0003723	RNA binding	SND1	IDA		Human	PMID:18453631
Molecular Function	GO:0003723	RNA binding	SND1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SND1	HDA		Human	PMID:22681889
Molecular Function	GO:0004521	RNA endonuclease activity	SND1	IDA		Human	PMID:28546213
Cellular Component	GO:0005737	cytoplasm	Snd1	IDA		Mouse	PMID:23571754
Cellular Component	GO:0005737	cytoplasm	snd1	IDA		Zfish	PMID:12753931
Cellular Component	GO:0005829	cytosol	SND1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0097433	dense body	Snd1	IDA		Mouse	PMID:23571754
Cellular Component	GO:0070062	extracellular exosome	SND1	HDA		Human	PMID:20458337
Cellular Component	GO:0016020	membrane	SND1	HDA		Human	PMID:16210410
Cellular Component	GO:0005739	mitochondrion	Snd1	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005634	nucleus	Snd1	IDA		Mouse	PMID:23571754
Biological Process	GO:0010587	miRNA catabolic process	SND1	IDA		Human	PMID:28546213
Biological Process	GO:0001649	osteoblast differentiation	SND1	HDA		Human	PMID:16210410
Biological Process	GO:0010564	regulation of cell cycle process	SND1	IMP		Human	PMID:28546213

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern