Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNRPB
  • Mouse genes Snrpb
  • Rat genes Snrpb
  • Zfish genes snrpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snrpb

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0071208	histone pre-mRNA DCP binding	Snrpb	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:Q16637	Human	PMID:10500148
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:Q8TEQ6	Human	PMID:11714716
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:Q8WXD5	Human	PMID:11748230
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:Q9H840	Human	PMID:12065586
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P83369	Human	PMID:12975319
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:O95400	Human	PMID:15105431
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:O95400	Human	PMID:16000308
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P54105	Human	PMID:16087681
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:Q16637	Human	PMID:16087681
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P52756	Human	PMID:18951082
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P54105	Human	PMID:18984161
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P62318	Human	PMID:18984161
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P62318	Human	PMID:19325628
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P54105	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P62318	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:O95400	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRPB	IPI	UniProtKB:P09234	Human	PMID:8076607
Molecular Function	GO:0005515	protein binding	Snrpb	IPI	PR:Q61048	Mouse	PMID:9724750
Molecular Function	GO:0003723	RNA binding	SNRPB	IPI	RNAcentral:URS00004416C5_9606	Human	PMID:18082603
Molecular Function	GO:0003723	RNA binding	SNRPB	HDA		Human	PMID:22681889
Molecular Function	GO:0070034	telomerase RNA binding	SNRPB	IPI	RNAcentral:URS00004A7003_9606	Human	PMID:18082603
Molecular Function	GO:1990446	U1 snRNP binding	Snrpb	IDA		Rat	PMID:8371979|RGD:1601359
Molecular Function	GO:1990447	U2 snRNP binding	Snrpb	IDA		Rat	PMID:8371979|RGD:1601359
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SNRPB	IDA		Human	PMID:11991638
Cellular Component	GO:0005737	cytoplasm	Snrpb	IDA		Mouse	PMID:15369763
Cellular Component	GO:0005829	cytosol	SNRPB	IDA		Human	PMID:18984161
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	Snrpb	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Cellular Component	GO:0034709	methylosome	SNRPB	IDA		Human	PMID:18984161
Cellular Component	GO:0005654	nucleoplasm	SNRPB	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SNRPB	IDA		Human	PMID:28076346
Cellular Component	GO:0005634	nucleus	SNRPB	IDA		Human	PMID:28781166
Cellular Component	GO:0005634	nucleus	Snrpb	IDA		Mouse	PMID:15369763
Cellular Component	GO:0034719	SMN-Sm protein complex	SNRPB	IDA		Human	PMID:18984161
Cellular Component	GO:0005681	spliceosomal complex	SNRPB	IPI		Human	PMID:33677607
Cellular Component	GO:0005697	telomerase holoenzyme complex	SNRPB	IDA		Human	PMID:18082603
Cellular Component	GO:0005685	U1 snRNP	SNRPB	IPI		Human	PMID:33677607
Cellular Component	GO:0005685	U1 snRNP	SNRPB	IDA		Human	PMID:21113136
Cellular Component	GO:0005685	U1 snRNP	SNRPB	IDA		Human	PMID:25555158
Cellular Component	GO:0005685	U1 snRNP	Snrpb	IDA		Rat	PMID:8371979|RGD:1601359
Cellular Component	GO:0005689	U12-type spliceosomal complex	SNRPB	IDA		Human	PMID:15146077
Cellular Component	GO:0005686	U2 snRNP	Snrpb	IDA		Rat	PMID:8371979|RGD:1601359
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SNRPB	IDA		Human	PMID:28076346
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SNRPB	IDA		Human	PMID:28781166
Cellular Component	GO:0005687	U4 snRNP	SNRPB	IDA		Human	PMID:21516107
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPB	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPB	IDA		Human	PMID:26912367
Cellular Component	GO:0005683	U7 snRNP	SNRPB	IDA		Human	PMID:11574479
Biological Process	GO:0007420	brain development	Snrpb	IEP		Rat	PMID:8462734|RGD:10448930
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNRPB	IDA		Human	PMID:28076346
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNRPB	IDA		Human	PMID:28781166
Biological Process	GO:0006479	protein methylation	SNRPB	IDA		Human	PMID:18495660
Biological Process	GO:0000387	spliceosomal snRNP assembly	SNRPB	IDA		Human	PMID:18984161

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern