Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNRPD2
  • Mouse genes Snrpd2
  • Rat genes Snrpd2,Snrpd2l
  • Zfish genes snrpd2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snrpd2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q16637	Human	PMID:10500148
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q8TEQ6	Human	PMID:11714716
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q8WXD5	Human	PMID:11748230
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q9H840	Human	PMID:12065586
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q9Y333	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62312	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q9Y333	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P54105	Human	PMID:18984161
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P54105	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62306	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62312	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q9Y333	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P54105	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q8NHQ1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62306	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62312	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62314	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:O14893	Human	PMID:31799625
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62306	Human	PMID:31799625
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62314	Human	PMID:31799625
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P54105	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62306	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q5MJ10	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:Q9BW66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62306	Human	PMID:9417867
Molecular Function	GO:0005515	protein binding	SNRPD2	IPI	UniProtKB:P62314	Human	PMID:9417867
Molecular Function	GO:0003723	RNA binding	SNRPD2	HDA		Human	PMID:22658674
Molecular Function	GO:1990446	U1 snRNP binding	Snrpd2	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SNRPD2	IDA		Human	PMID:11991638
Cellular Component	GO:0005829	cytosol	SNRPD2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	SNRPD2	IDA		Human	PMID:18984161
Cellular Component	GO:0070062	extracellular exosome	SNRPD2	HDA		Human	PMID:20458337
Cellular Component	GO:0034709	methylosome	SNRPD2	IDA		Human	PMID:18984161
Cellular Component	GO:0005634	nucleus	SNRPD2	IDA		Human	PMID:28076346
Cellular Component	GO:0005634	nucleus	Snrpd2	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0034715	pICln-Sm protein complex	SNRPD2	IDA		Human	PMID:18984161
Cellular Component	GO:0034719	SMN-Sm protein complex	SNRPD2	IDA		Human	PMID:18984161
Cellular Component	GO:0005681	spliceosomal complex	SNRPD2	IPI		Human	PMID:33677607
Cellular Component	GO:0005685	U1 snRNP	SNRPD2	IPI		Human	PMID:33677607
Cellular Component	GO:0005685	U1 snRNP	SNRPD2	IDA		Human	PMID:21113136
Cellular Component	GO:0005685	U1 snRNP	SNRPD2	IDA		Human	PMID:25555158
Cellular Component	GO:0005685	U1 snRNP	Snrpd2	IDA		Rat	PMID:16502463|RGD:10448962
Cellular Component	GO:0005689	U12-type spliceosomal complex	SNRPD2	IDA		Human	PMID:15146077
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SNRPD2	IDA		Human	PMID:28076346
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SNRPD2	IDA		Human	PMID:28781166
Cellular Component	GO:0005687	U4 snRNP	SNRPD2	IDA		Human	PMID:21516107
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPD2	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRPD2	IDA		Human	PMID:26912367
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNRPD2	IDA		Human	PMID:28076346
Biological Process	GO:0000387	spliceosomal snRNP assembly	SNRPD2	IDA		Human	PMID:18984161

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern