Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SOX13
  • Mouse genes Sox13
  • Rat genes Sox13
  • Zfish genes sox13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sox13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	SOX13	IDA		Human	PMID:10871192
Molecular Function	GO:0001217	DNA-binding transcription repressor activity	Sox13	IDA		Mouse	MGI:MGI:5766856|PMID:26525805
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	SOX13	IMP		Human	PMID:20028982
Molecular Function	GO:0042802	identical protein binding	SOX13	IPI	UniProtKB:Q9UN79	Human	PMID:10871192
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:P36402	Human	PMID:17218525
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:P36402	Human	PMID:20028982
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q03014	Human	PMID:20028982
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:P56545	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:P56545-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q12933	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q14119	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q8N3L3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q96SQ5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SOX13	IPI	UniProtKB:Q9C086	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Sox13	IPI	UniProtKB:Q00417	Mouse	MGI:MGI:3695974|PMID:17218525
Molecular Function	GO:0005515	protein binding	Sox13	IPI	UniProtKB:P43120	Mouse	MGI:MGI:4460849|PMID:20028982
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Sox13	IDA		Mouse	MGI:MGI:1201315|PMID:9524265
Molecular Function	GO:0043565	sequence-specific DNA binding	Sox13	IDA		Mouse	MGI:MGI:1195512|PMID:9421502
Molecular Function	GO:0043565	sequence-specific DNA binding	Sox13	IDA		Mouse	MGI:MGI:1201315|PMID:9524265
Molecular Function	GO:0000976	transcription cis-regulatory region binding	SOX13	IDA		Human	PMID:26525805
Cellular Component	GO:0005737	cytoplasm	SOX13	IDA		Human	PMID:10871192
Cellular Component	GO:0005737	cytoplasm	Sox13	IDA		Mouse	MGI:MGI:6383583|PMID:10871192
Cellular Component	GO:0005654	nucleoplasm	SOX13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Sox13	IDA		Mouse	MGI:MGI:6383583|PMID:10871192
Cellular Component	GO:0005634	nucleus	Sox13	IDA		Mouse	MGI:MGI:5766856|PMID:26525805
Cellular Component	GO:0005634	nucleus	Sox13	IDA		Mouse	MGI:MGI:1195512|PMID:9421502
Cellular Component	GO:0005634	nucleus	Sox13	IDA		Mouse	MGI:MGI:3694379|PMID:16835393
Biological Process	GO:0042492	gamma-delta T cell differentiation	Sox13	IMP		Mouse	MGI:MGI:6276541|PMID:30413363
Biological Process	GO:0042492	gamma-delta T cell differentiation	Sox13	IMP		Mouse	MGI:MGI:3695974|PMID:17218525
Biological Process	GO:0090090	negative regulation of canonical Wnt signaling pathway	SOX13	IMP		Human	PMID:20028982
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	SOX13	IMP		Human	PMID:20028982
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	SOX13	IMP		Human	PMID:20028982
Biological Process	GO:0090336	positive regulation of brown fat cell differentiation	Sox13	IMP		Mouse	MGI:MGI:5812817|PMID:27923061
Biological Process	GO:0045588	positive regulation of gamma-delta T cell differentiation	Sox13	IMP		Mouse	MGI:MGI:5486619|PMID:23562159
Biological Process	GO:0006355	regulation of DNA-templated transcription	Sox13	IMP		Mouse	MGI:MGI:5486619|PMID:23562159
Biological Process	GO:0045586	regulation of gamma-delta T cell differentiation	Sox13	IDA		Mouse	PMID:21737317
Biological Process	GO:0021529	spinal cord oligodendrocyte cell differentiation	Sox13	IGI	UniProtKB:P40645	Mouse	MGI:MGI:5766856|PMID:26525805

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern