Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SRRM1
  • Mouse genes Srrm1
  • Rat genes Srrm1
  • Zfish genes srrm1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Srrm1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:P78362	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:P49760	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:P49760	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:P49760-3	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:A7MD48	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SRRM1	IPI	UniProtKB:P78362	Human	PMID:32707033
Molecular Function	GO:0003723	RNA binding	SRRM1	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SRRM1	IDA		Human	PMID:11991638
Cellular Component	GO:0016607	nuclear speck	SRRM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005681	spliceosomal complex	Srrm1	IDA		Mouse	PMID:11555636
Biological Process	GO:0051179	localization	SRRM1	IDA		Human	PMID:12624182

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern