Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SSB
  • Mouse genes Ssb
  • Rat genes LOC680385,Ssb
  • Zfish genes ssb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ssb

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	SSB	EXP		Human	PMID:12842046
Molecular Function	GO:0003677	DNA binding	SSB	IDA		Human	PMID:12842046
Molecular Function	GO:0008266	poly(U) RNA binding	SSB	IMP		Human	PMID:12842046
Molecular Function	GO:0008266	poly(U) RNA binding	SSB	IMP		Human	PMID:15004549
Molecular Function	GO:0008266	poly(U) RNA binding	SSB	IMP		Human	PMID:16387655
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:Q99IB8:PRO_0000045599	Human	PMID:23552417
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:Q99IB8:PRO_0000045603	Human	PMID:23552417
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:P19712:PRO_0000038050	Human	PMID:24965446
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:Q99IB8:PRO_0000045599	Human	PMID:25616068
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:O96000	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:P54652	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SSB	IPI	UniProtKB:Q8WZA2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ssb	IPI	UniProtKB:Q5I0H3	Rat	PMID:17646655|RGD:13432294
Molecular Function	GO:0003723	RNA binding	SSB	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SSB	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	SSB	IMP		Human	PMID:3192525
Molecular Function	GO:0003723	RNA binding	Ssb	IDA		Mouse	PMID:17971306
Molecular Function	GO:1990825	sequence-specific mRNA binding	SSB	IMP		Human	PMID:9154801
Molecular Function	GO:0000049	tRNA binding	SSB	IMP		Human	PMID:10983981
Cellular Component	GO:0000781	chromosome, telomeric region	SSB	HDA		Human	PMID:19135898
Cellular Component	GO:0005737	cytoplasm	SSB	IDA		Human	PMID:17308035
Cellular Component	GO:0005634	nucleus	SSB	IDA		Human	PMID:17308035
Cellular Component	GO:0005634	nucleus	SSB	IDA		Human	PMID:24965446
Cellular Component	GO:0005634	nucleus	Ssb	IDA		Mouse	PMID:11817591
Cellular Component	GO:0005634	nucleus	Ssb	IDA		Mouse	PMID:16449655
Biological Process	GO:0075522	IRES-dependent viral translational initiation	SSB	IDA		Human	PMID:12384597
Biological Process	GO:0071045	nuclear histone mRNA catabolic process	SSB	IMP		Human	PMID:9154801
Biological Process	GO:1903608	protein localization to cytoplasmic stress granule	SSB	IDA		Human	PMID:24965446
Biological Process	GO:0042780	tRNA 3'-end processing	SSB	IGI	UniProtKB:P87058	Human	PMID:10983981
Biological Process	GO:0001682	tRNA 5'-leader removal	SSB	IGI	UniProtKB:P87058	Human	PMID:10983981
Biological Process	GO:0006409	tRNA export from nucleus	SSB	IMP		Human	PMID:17308035
Biological Process	GO:0008033	tRNA processing	SSB	IMP		Human	PMID:17308035
Biological Process	GO:0008033	tRNA processing	Ssb	IMP		Rat	PMID:12049746|RGD:737671

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern