Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SSC5D
  • Mouse genes Ssc5d
  • Rat genes Ssc5d
  • Zfish genes si:ch211-150o23.3,si:ch211-161n3.3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ssc5d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0050840	extracellular matrix binding	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Molecular Function	GO:0001968	fibronectin binding	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Molecular Function	GO:0043236	laminin binding	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:P37198	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q13077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q13503	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q7Z6G3-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q96EV8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q96L14	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9UPT5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9Y6Y8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:O00560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:P37198	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q13503	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q13526	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q15560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q6QNY1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q7Z3Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q7Z6G3-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q96BD8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q96CS2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9NX70	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9P086	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9UPT5-1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SSC5D	IPI	UniProtKB:Q9Y6Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Ssc5d	IPI	PR:P16045	Mouse	PMID:21217009
Molecular Function	GO:0005044	scavenger receptor activity	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Cellular Component	GO:0005615	extracellular space	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Cellular Component	GO:0005615	extracellular space	Ssc5d	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Biological Process	GO:0006952	defense response	Ssc5d	IDA		Mouse	PMID:21217009
Biological Process	GO:0050829	defense response to Gram-negative bacterium	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Biological Process	GO:0050830	defense response to Gram-positive bacterium	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Biological Process	GO:0042494	detection of bacterial lipoprotein	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Biological Process	GO:0032717	negative regulation of interleukin-8 production	Ssc5d	IDA		Mouse	MGI:MGI:4939978|PMID:21217009
Biological Process	GO:0032677	regulation of interleukin-8 production	Ssc5d	IDA		Mouse	PMID:21217009

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern