Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SUDS3
  • Mouse genes Suds3
  • Rat genes Suds3
  • Zfish genes suds3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Suds3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019899	enzyme binding	SUDS3	IPI	UniProtKB:Q6R6M4	Human	PMID:21239494
Molecular Function	GO:0004407	histone deacetylase activity	SUDS3	IDA		Human	PMID:21239494
Molecular Function	GO:0042826	histone deacetylase binding	Suds3	IDA		Mouse	MGI:MGI:2670031|PMID:11909966
Molecular Function	GO:0042802	identical protein binding	Suds3	IPI	UniProtKB:Q8BR65	Mouse	MGI:MGI:2670031|PMID:11909966
Molecular Function	GO:0042802	identical protein binding	Suds3	IPI	PR:Q8BR65	Mouse	PMID:15489224
Molecular Function	GO:0005515	protein binding	SUDS3	IPI	UniProtKB:P51610	Human	PMID:12670868
Molecular Function	GO:0005515	protein binding	SUDS3	IPI	UniProtKB:Q9HCU9	Human	PMID:16919237
Molecular Function	GO:0005515	protein binding	SUDS3	IPI	UniProtKB:O95751	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SUDS3	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Suds3	IPI	UniProtKB:Q60520|UniProtKB:Q62141|UniProtKB:Q8BR65	Mouse	MGI:MGI:2670031|PMID:11909966
Molecular Function	GO:0005515	protein binding	Suds3	IPI	UniProtKB:Q60520|UniProtKB:Q62141	Mouse	MGI:MGI:2670031|PMID:11909966
Molecular Function	GO:0005515	protein binding	Suds3	IPI	PR:Q60520	Mouse	PMID:15489224
Molecular Function	GO:0005515	protein binding	Suds3	IPI	PR:Q62141	Mouse	PMID:15489224
Molecular Function	GO:0005515	protein binding	Suds3	IPI	PR:P61809	Mouse	PMID:15489224
Cellular Component	GO:0005829	cytosol	SUDS3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016604	nuclear body	SUDS3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SUDS3	IDA		Human	PMID:21239494
Cellular Component	GO:0016580	Sin3 complex	Suds3	IDA		Mouse	MGI:MGI:2670031|PMID:11909966
Biological Process	GO:0001835	blastocyst hatching	Suds3	IMP		Mouse	PMID:27869233
Biological Process	GO:0016575	histone deacetylation	SUDS3	IDA		Human	PMID:21239494
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Suds3	IDA		Mouse	MGI:MGI:2670031|PMID:11909966
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Suds3	IDA		Mouse	PMID:15489224
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	SUDS3	IMP		Human	PMID:22783022
Biological Process	GO:0043065	positive regulation of apoptotic process	SUDS3	IMP		Human	PMID:21239494
Biological Process	GO:0021762	substantia nigra development	SUDS3	HEP		Human	PMID:22926577

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern