Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Sycp1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SYCP1
- Mouse genes Sycp1
- Rat genes Sycp1
- Zfish genes sycp1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sycp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003690	double-stranded DNA binding	SYCP1	IDA		Human	PMID:29915389
Molecular Function	GO:0005515	protein binding	Sycp1	IPI	UniProtKB:Q505B8	Mouse	MGI:MGI:3581466\|PMID:15944401
Molecular Function	GO:0005515	protein binding	Sycp1	IPI	UniProtKB:P70281,UniProtKB:Q61545,UniProtKB:Q8C5S7,UniProtKB:Q96EQ9\|UniProtKB:P70281,UniProtKB:Q61545,UniProtKB:Q96EQ9\|UniProtKB:P70281,UniProtKB:Q8C5S7,UniProtKB:Q96EQ9	Mouse	MGI:MGI:6355525\|PMID:27932493
Molecular Function	GO:0005515	protein binding	Sycp1	IPI	UniProtKB:Q3KQP7	Mouse	MGI:MGI:6400008\|PMID:30949703
Molecular Function	GO:0005515	protein binding	Sycp1	IPI	PR:Q9D495	Mouse	PMID:16968740
Cellular Component	GO:0030849	autosome	Sycp1	IDA		Mouse	PMID:28031483
Cellular Component	GO:0000801	central element	Sycp1	IDA		Mouse	PMID:23133398
Cellular Component	GO:0000801	central element	Sycp1	IDA		Mouse	PMID:12584241
Cellular Component	GO:0005694	chromosome	Sycp1	IDA		Mouse	MGI:MGI:6400008\|PMID:30949703
Cellular Component	GO:0005694	chromosome	Sycp1	IDA		Mouse	MGI:MGI:6272683\|PMID:30272023
Cellular Component	GO:0005694	chromosome	Sycp1	IDA		Mouse	MGI:MGI:6478065\|PMID:30746471
Cellular Component	GO:0005694	chromosome	Sycp1	IDA		Mouse	MGI:MGI:3664716\|PMID:16968740
Cellular Component	GO:0005694	chromosome	Sycp1	IDA		Mouse	PMID:10794082
Cellular Component	GO:0000794	condensed nuclear chromosome	Sycp1	IDA		Mouse	PMID:24891606
Cellular Component	GO:0000794	condensed nuclear chromosome	Sycp1	IDA		Mouse	PMID:22863743
Cellular Component	GO:0000794	condensed nuclear chromosome	Sycp1	IDA		Mouse	PMID:24589552
Cellular Component	GO:0000794	condensed nuclear chromosome	Sycp1	IDA		Mouse	PMID:22854038
Cellular Component	GO:0001673	male germ cell nucleus	Sycp1	IDA		Mouse	PMID:17696610
Cellular Component	GO:0005634	nucleus	Sycp1	IDA		Rat	PMID:15942958\|RGD:1598733
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IMP		Mouse	MGI:MGI:3579731\|PMID:15937223
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:27856912
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:22011390
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:26490168
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:17696610
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:30718482
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:27760146
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:16968740
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:25675407
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:18070917
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:27473657
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:12815066
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:20551173
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:18316482
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Mouse	PMID:26358182
Cellular Component	GO:0000795	synaptonemal complex	Sycp1	IDA		Rat	PMID:8660935\|RGD:9686370
Cellular Component	GO:0000802	transverse filament	Sycp1	IDA		Mouse	PMID:21539824
Cellular Component	GO:0000802	transverse filament	Sycp1	IDA		Mouse	PMID:18283110
Cellular Component	GO:0000802	transverse filament	Sycp1	IDA		Mouse	PMID:15870106
Cellular Component	GO:0000802	transverse filament	Sycp1	IDA		Mouse	PMID:22711701
Cellular Component	GO:0000802	transverse filament	Sycp1	IDA		Rat	PMID:1464329\|RGD:729937
Biological Process	GO:0051026	chiasma assembly	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0007129	homologous chromosome pairing at meiosis	Sycp1	IMP		Mouse	MGI:MGI:3579731\|PMID:15937223
Biological Process	GO:0051878	lateral element assembly	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0000711	meiotic DNA repair synthesis	Sycp1	IMP	MGI:MGI:3580000	Mouse	PMID:22164254
Biological Process	GO:0000711	meiotic DNA repair synthesis	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0051289	protein homotetramerization	SYCP1	IDA		Human	PMID:29915389
Biological Process	GO:0007131	reciprocal meiotic recombination	Sycp1	IMP		Mouse	MGI:MGI:3579731\|PMID:15937223
Biological Process	GO:0032880	regulation of protein localization	Sycp1	IMP	MGI:MGI:3580000	Mouse	PMID:16968740
Biological Process	GO:0035092	sperm DNA condensation	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0007283	spermatogenesis	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0007130	synaptonemal complex assembly	Sycp1	IMP		Mouse	MGI:MGI:3579731\|PMID:15937223
Biological Process	GO:0007130	synaptonemal complex assembly	Sycp1	IDA		Mouse	MGI:MGI:3581466\|PMID:15944401
Biological Process	GO:0007130	synaptonemal complex assembly	Sycp1	IGI	MGI:MGI:105931	Mouse	PMID:22164254
Biological Process	GO:0007130	synaptonemal complex assembly	Sycp1	IGI	MGI:MGI:109542	Mouse	PMID:22164254
Biological Process	GO:0007130	synaptonemal complex assembly	Sycp1	IMP	MGI:MGI:3580000	Mouse	PMID:22164254

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 10/29/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.