Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYDE1
  • Mouse genes Syde1
  • Rat genes Syde1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Syde1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005096	GTPase activator activity	SYDE1	IDA		Human	PMID:27917469
Molecular Function	GO:0005096	GTPase activator activity	SYDE1	IMP		Human	PMID:27917469
Molecular Function	GO:0005096	GTPase activator activity	Syde1	IDA		Mouse	PMID:23791195
Molecular Function	GO:0030695	GTPase regulator activity	SYDE1	IDA		Human	PMID:27917469
Molecular Function	GO:0030695	GTPase regulator activity	SYDE1	IMP		Human	PMID:27917469
Molecular Function	GO:0005515	protein binding	Syde1	IPI	PR:Q8BSS9	Mouse	PMID:23791195
Molecular Function	GO:0005515	protein binding	Syde1	IPI	PR:O08599	Mouse	PMID:23791195
Molecular Function	GO:0044877	protein-containing complex binding	Syde1	IDA		Mouse	PMID:23791195
Cellular Component	GO:0044300	cerebellar mossy fiber	Syde1	IDA		Mouse	PMID:23791195
Cellular Component	GO:0005829	cytosol	Syde1	IDA		Mouse	PMID:23791195
Cellular Component	GO:0097060	synaptic membrane	Syde1	IDA		Mouse	PMID:23791195
Biological Process	GO:0031532	actin cytoskeleton reorganization	SYDE1	IDA		Human	PMID:27917469
Biological Process	GO:0016477	cell migration	SYDE1	IDA		Human	PMID:27917469
Biological Process	GO:0016477	cell migration	SYDE1	IMP		Human	PMID:27917469
Biological Process	GO:0060716	labyrinthine layer blood vessel development	Syde1	IMP	MGI:MGI:5905625	Mouse	PMID:27917469
Biological Process	GO:0060711	labyrinthine layer development	Syde1	IMP	MGI:MGI:5905625	Mouse	PMID:27917469
Biological Process	GO:0050806	positive regulation of synaptic transmission	Syde1	IMP	MGI:MGI:4841821	Mouse	PMID:23791195
Biological Process	GO:1901165	positive regulation of trophoblast cell migration	SYDE1	IMP		Human	PMID:27917469
Biological Process	GO:0051493	regulation of cytoskeleton organization	SYDE1	IMP		Human	PMID:27917469
Biological Process	GO:0046578	regulation of Ras protein signal transduction	Syde1	IMP	MGI:MGI:5905625	Mouse	PMID:27917469
Biological Process	GO:0016081	synaptic vesicle docking	Syde1	IMP	MGI:MGI:4841821	Mouse	PMID:23791195
Biological Process	GO:0007130	synaptonemal complex assembly	Syde1	IMP		Mouse	PMID:23791195

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern