Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYNCRIP
  • Mouse genes Syncrip
  • Rat genes Syncrip
  • Zfish genes syncrip,syncripl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Syncrip

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	Syncrip	IDA		Rat	PMID:15798208|RGD:9854643
Molecular Function	GO:0048027	mRNA 5'-UTR binding	Syncrip	IDA		Rat	PMID:17403780|RGD:10059417
Molecular Function	GO:0008143	poly(A) binding	Syncrip	IDA		Mouse	PMID:10734137
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q14103-4	Human	PMID:12674497
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q9NR22	Human	PMID:19060904
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q5JVS0	Human	PMID:19523114
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:P07814	Human	PMID:21220307
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:P07814	Human	PMID:22386318
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q99873	Human	PMID:23455924
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q9NR22	Human	PMID:23455924
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q9NR22-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SYNCRIP	IPI	UniProtKB:Q9NR22	Human	PMID:29892012
Molecular Function	GO:0003723	RNA binding	SYNCRIP	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SYNCRIP	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SYNCRIP	IDA		Human	PMID:11991638
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	SYNCRIP	IPI		Human	PMID:19029303
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	SYNCRIP	IDA		Human	PMID:19029303
Cellular Component	GO:0005737	cytoplasm	Syncrip	IDA		Mouse	PMID:10734137
Cellular Component	GO:0005737	cytoplasm	Syncrip	IDA		Rat	PMID:15798208|RGD:9854643
Cellular Component	GO:0005829	cytosol	SYNCRIP	IDA		Human	PMID:11051545
Cellular Component	GO:0005829	cytosol	SYNCRIP	IDA		Human	PMID:19029303
Cellular Component	GO:0097452	GAIT complex	SYNCRIP	IDA		Human	PMID:15479637
Cellular Component	GO:0097452	GAIT complex	SYNCRIP	IDA		Human	PMID:23071094
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	Syncrip	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Cellular Component	GO:0106002	mCRD-mediated mRNA stability complex	SYNCRIP	IPI		Human	PMID:11051545
Cellular Component	GO:0016020	membrane	SYNCRIP	HDA		Human	PMID:16210410
Cellular Component	GO:0016020	membrane	SYNCRIP	HDA		Human	PMID:19946888
Cellular Component	GO:0016020	membrane	Syncrip	IDA		Rat	PMID:18492485|RGD:10059419
Cellular Component	GO:0043025	neuronal cell body	Syncrip	IDA		Rat	PMID:15475564|RGD:10059416
Cellular Component	GO:0005634	nucleus	Syncrip	IDA		Rat	PMID:15798208|RGD:9854643
Cellular Component	GO:1990635	proximal dendrite	Syncrip	IDA		Rat	PMID:15475564|RGD:10059416
Cellular Component	GO:1990904	ribonucleoprotein complex	SYNCRIP	IDA		Human	PMID:15479637
Cellular Component	GO:1990904	ribonucleoprotein complex	SYNCRIP	IDA		Human	PMID:17289661
Biological Process	GO:0071346	cellular response to type II interferon	SYNCRIP	IDA		Human	PMID:15479637
Biological Process	GO:0007623	circadian rhythm	Syncrip	IEP		Rat	PMID:15798208|RGD:9854643
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	SYNCRIP	IDA		Human	PMID:11051545
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	SYNCRIP	IDA		Human	PMID:19029303
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	SYNCRIP	IMP		Human	PMID:19029303
Biological Process	GO:0090367	negative regulation of mRNA modification	Syncrip	IMP		Rat	PMID:11134005|RGD:10059415
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	SYNCRIP	IDA		Human	PMID:11051545
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	SYNCRIP	IDA		Human	PMID:19029303
Biological Process	GO:0017148	negative regulation of translation	SYNCRIP	IMP		Human	PMID:15479637
Biological Process	GO:0017148	negative regulation of translation	SYNCRIP	IDA		Human	PMID:23071094
Biological Process	GO:0001649	osteoblast differentiation	SYNCRIP	HDA		Human	PMID:16210410
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	SYNCRIP	IDA		Human	PMID:11051545
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	SYNCRIP	IDA		Human	PMID:19029303
Biological Process	GO:0045727	positive regulation of translation	Syncrip	IMP		Rat	PMID:17403780|RGD:10059417

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern