Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYNDIG1
  • Mouse genes Syndig1
  • Rat genes Syndig1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Syndig1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035254	glutamate receptor binding	Syndig1	IPI	UniProtKB:P23818|UniProtKB:P23819	Mouse	MGI:MGI:4439218|PMID:20152115
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q969F0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:O15529	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:O15552	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:O95214	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:P21145	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q13520	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q6ZSS7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q7RTY0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q8IVJ1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q969F0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q96MV1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q9BTV4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q9GZR5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q9H1C4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q9NQQ7-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SYNDIG1	IPI	UniProtKB:Q9NZD1	Human	PMID:32296183
Molecular Function	GO:0042803	protein homodimerization activity	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Cellular Component	GO:0044297	cell body	Syndig1	IDA		Rat	PMID:20152115|RGD:8554654
Cellular Component	GO:0043198	dendritic shaft	Syndig1	IDA		Rat	PMID:20152115|RGD:8554654
Cellular Component	GO:0043197	dendritic spine	Syndig1	IDA		Rat	PMID:20152115|RGD:8554654
Cellular Component	GO:0031901	early endosome membrane	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Cellular Component	GO:0060076	excitatory synapse	Syndig1	IDA		Rat	PMID:20152115|RGD:8554654
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	SYNDIG1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Cellular Component	GO:0014069	postsynaptic density	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Cellular Component	GO:0098839	postsynaptic density membrane	Syndig1	IDA		Mouse	PMID:29490264
Cellular Component	GO:0030672	synaptic vesicle membrane	Syndig1	IDA		Mouse	PMID:29490264
Biological Process	GO:0006886	intracellular protein transport	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Biological Process	GO:0051965	positive regulation of synapse assembly	SYNDIG1	IDA		Human	PMID:20152115
Biological Process	GO:0051965	positive regulation of synapse assembly	Syndig1	IDA		Mouse	MGI:MGI:4439218|PMID:20152115
Biological Process	GO:0051965	positive regulation of synapse assembly	Syndig1	IMP		Rat	PMID:20152115|RGD:8554654
Biological Process	GO:0097091	synaptic vesicle clustering	Syndig1	IDA		Rat	PMID:20152115|RGD:8554654

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern