Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Synj1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SYNJ1
- Mouse genes Synj1
- Rat genes Synj1
- Zfish genes synj1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Synj1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990175	EH domain binding	Synj1	IDA		Rat	PMID:9428629\|RGD:11059574
Molecular Function	GO:0052658	inositol-1,4,5-trisphosphate 5-phosphatase activity	Synj1	IDA		Rat	PMID:8552192\|RGD:69388
Molecular Function	GO:0034596	phosphatidylinositol phosphate 4-phosphatase activity	synj1	IDA		Zfish	PMID:15470129
Molecular Function	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:18093523
Molecular Function	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	Synj1	IDA		Rat	PMID:8552192\|RGD:69388
Molecular Function	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	synj1	IDA		Zfish	PMID:15470129
Molecular Function	GO:0004438	phosphatidylinositol-3-phosphate phosphatase activity	SYNJ1	IDA		Human	PMID:18093523
Molecular Function	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SYNJ1	IDA		Human	PMID:18093523
Molecular Function	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	SYNJ1	IMP		Human	PMID:18591654
Molecular Function	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:18591654
Molecular Function	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Synj1	IDA		Rat	PMID:17097615\|RGD:13513210
Molecular Function	GO:0043812	phosphatidylinositol-4-phosphate phosphatase activity	SYNJ1	IDA		Human	PMID:18093523
Molecular Function	GO:0005515	protein binding	Synj1	IPI	PR:Q7TQF7	Mouse	PMID:18093523
Molecular Function	GO:0005515	protein binding	Synj1	IPI	PR:Q62420	Mouse	PMID:18093523
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:Q99962	Rat	PMID:10764144\|RGD:8554756
Molecular Function	GO:0005515	protein binding	Synj1	IPI	RGD:620276	Rat	PMID:11518713\|RGD:13464360
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:Q12965	Rat	PMID:17257598\|RGD:2312449
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:Q99962	Rat	PMID:17257598\|RGD:2312449
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:Q96RF0	Rat	PMID:20427313\|RGD:8554247
Molecular Function	GO:0005515	protein binding	Synj1	IPI	RGD:620578\|RGD:708456\|RGD:620276	Rat	PMID:9238017\|RGD:633918
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:O35179	Rat	PMID:9238017\|RGD:633918
Molecular Function	GO:0005515	protein binding	Synj1	IPI	UniProtKB:O35180	Rat	PMID:9238017\|RGD:633918
Molecular Function	GO:0005515	protein binding	Synj1	IPI	RGD:3247	Rat	PMID:9950691\|RGD:69919
Molecular Function	GO:0044877	protein-containing complex binding	Synj1	IDA		Rat	PMID:17257598\|RGD:2312449
Molecular Function	GO:0017124	SH3 domain binding	Synj1	IPI	RGD:620274	Rat	PMID:11498538\|RGD:628465
Molecular Function	GO:0017124	SH3 domain binding	Synj1	IDA		Rat	PMID:17097615\|RGD:13513210
Molecular Function	GO:0017124	SH3 domain binding	Synj1	IDA		Rat	PMID:8552192\|RGD:69388
Cellular Component	GO:0030132	clathrin coat of coated pit	Synj1	IDA		Rat	PMID:9428629\|RGD:11059574
Cellular Component	GO:0005737	cytoplasm	Synj1	IDA		Rat	PMID:11498538\|RGD:628465
Cellular Component	GO:0098978	glutamatergic synapse	Synj1	IDA		Mouse	PMID:18987319
Cellular Component	GO:0098978	glutamatergic synapse	Synj1	IMP		Mouse	PMID:18987319
Cellular Component	GO:0030117	membrane coat	Synj1	IDA		Mouse	PMID:11879655
Cellular Component	GO:0005874	microtubule	Synj1	IDA		Rat	PMID:9428629\|RGD:11059574
Cellular Component	GO:0043005	neuron projection	Synj1	IDA		Rat	PMID:14704270\|RGD:2312451
Cellular Component	GO:0098688	parallel fiber to Purkinje cell synapse	Synj1	IDA		Rat	PMID:7982917\|RGD:13702441
Cellular Component	GO:0098793	presynapse	SYNJ1	IDA		Human	PMID:18093523
Cellular Component	GO:0098793	presynapse	Synj1	IDA		Rat	PMID:7982917\|RGD:13702441
Cellular Component	GO:0032991	protein-containing complex	Synj1	IDA		Rat	PMID:17257598\|RGD:2312449
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Synj1	IDA		Mouse	PMID:10535736
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Synj1	IMP		Mouse	PMID:10535736
Cellular Component	GO:0097060	synaptic membrane	Synj1	IDA		Rat	PMID:9079704\|RGD:13504743
Cellular Component	GO:0097060	synaptic membrane	Synj1	IDA		Rat	PMID:9428629\|RGD:11059574
Biological Process	GO:0007420	brain development	Synj1	IEP		Rat	PMID:9931483\|RGD:2312452
Biological Process	GO:0007268	chemical synaptic transmission	synj1	IMP	ZFIN:ZDB-GENO-100510-21	Zfish	PMID:19424431
Biological Process	GO:0007268	chemical synaptic transmission	synj1	IMP	ZFIN:ZDB-GENO-100603-1	Zfish	PMID:19424431
Biological Process	GO:0007268	chemical synaptic transmission	synj1	IMP	ZFIN:ZDB-GENO-100510-20	Zfish	PMID:19424431
Biological Process	GO:0009584	detection of visible light	synj1	IMP	ZFIN:ZDB-GENO-001221-2	Zfish	PMID:11222552
Biological Process	GO:0007612	learning	SYNJ1	IMP		Human	PMID:18591654
Biological Process	GO:0007612	learning	Synj1	IMP	MGI:MGI:3512067	Mouse	PMID:18591654
Biological Process	GO:0006836	neurotransmitter transport	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:10535736
Biological Process	GO:0046856	phosphatidylinositol dephosphorylation	SYNJ1	IDA		Human	PMID:18093523
Biological Process	GO:0046856	phosphatidylinositol dephosphorylation	SYNJ1	IMP		Human	PMID:18591654
Biological Process	GO:0046856	phosphatidylinositol dephosphorylation	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:10535736
Biological Process	GO:0046856	phosphatidylinositol dephosphorylation	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:18591654
Biological Process	GO:0046488	phosphatidylinositol metabolic process	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:10535736
Biological Process	GO:1904980	positive regulation of endosome organization	SYNJ1	IMP		Human	PMID:22511594
Biological Process	GO:0014015	positive regulation of gliogenesis	Synj1	IMP		Rat	PMID:19282871\|RGD:2312448
Biological Process	GO:0048260	positive regulation of receptor-mediated endocytosis	Synj1	IMP		Rat	PMID:15821731\|RGD:2312450
Biological Process	GO:0098884	postsynaptic neurotransmitter receptor internalization	Synj1	IMP		Mouse	MGI:MGI:5819348\|PMID:18987319
Biological Process	GO:0099149	regulation of postsynaptic neurotransmitter receptor internalization	Synj1	IMP		Mouse	PMID:18987319
Biological Process	GO:0099149	regulation of postsynaptic neurotransmitter receptor internalization	Synj1	IDA		Mouse	PMID:18987319
Biological Process	GO:0034097	response to cytokine	Synj1	IMP		Rat	PMID:19282871\|RGD:2312448
Biological Process	GO:0032526	response to retinoic acid	Synj1	IMP		Rat	PMID:19282871\|RGD:2312448
Biological Process	GO:0060041	retina development in camera-type eye	synj1	IMP	ZFIN:ZDB-GENO-001221-2	Zfish	PMID:11264308
Biological Process	GO:0060041	retina development in camera-type eye	synj1	IMP	ZFIN:ZDB-GENO-001221-2	Zfish	PMID:9667001
Biological Process	GO:0046549	retinal cone cell development	synj1	IMP	ZFIN:ZDB-GENO-001221-2	Zfish	PMID:15470129
Biological Process	GO:0046549	retinal cone cell development	synj1	IMP	ZFIN:ZDB-GENO-100430-9	Zfish	PMID:19827152
Biological Process	GO:0050808	synapse organization	synj1	IMP	ZFIN:ZDB-GENO-140514-14	Zfish	PMID:24419318
Biological Process	GO:0050808	synapse organization	synj1	IMP	ZFIN:ZDB-GENO-001221-2	Zfish	PMID:15470129
Biological Process	GO:0048488	synaptic vesicle endocytosis	SYNJ1	IGI	UniProtKB:Q8CHC4	Human	PMID:18093523
Biological Process	GO:0048488	synaptic vesicle endocytosis	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:18093523
Biological Process	GO:0016082	synaptic vesicle priming	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:12481038
Biological Process	GO:0048489	synaptic vesicle transport	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:10535736
Biological Process	GO:0016191	synaptic vesicle uncoating	Synj1	IMP		Mouse	MGI:MGI:5300660\|PMID:22099461
Biological Process	GO:0016191	synaptic vesicle uncoating	Synj1	IMP	MGI:MGI:2179801	Mouse	PMID:12481038
Biological Process	GO:0016191	synaptic vesicle uncoating	Synj1	IDA		Mouse	PMID:10535736
Biological Process	GO:0016191	synaptic vesicle uncoating	Synj1	IMP		Mouse	PMID:10535736
Biological Process	GO:0099518	vesicle cytoskeletal trafficking	synj1	IMP	ZFIN:ZDB-GENO-150209-8	Zfish	PMID:27417116

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/19/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.