Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TCERG1
  • Mouse genes Tcerg1
  • Rat genes Tcerg1
  • Zfish genes tcerg1a,tcerg1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tcerg1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TCERG1	IPI	UniProtKB:O14776	Human	PMID:17060612
Molecular Function	GO:0070064	proline-rich region binding	Tcerg1	IDA		Mouse	PMID:17915251
Molecular Function	GO:0005515	protein binding	TCERG1	IPI	UniProtKB:P42858	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	TCERG1	IPI	UniProtKB:Q99728	Human	PMID:15383276
Molecular Function	GO:0005515	protein binding	TCERG1	IPI	UniProtKB:P42858	Human	PMID:17500595
Molecular Function	GO:0003723	RNA binding	TCERG1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	TCERG1	HDA		Human	PMID:22681889
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	TCERG1	IPI	UniProtKB:Q9UI36	Human	PMID:20956529
Molecular Function	GO:0003714	transcription corepressor activity	TCERG1	IDA		Human	PMID:20956529
Molecular Function	GO:0044390	ubiquitin-like protein conjugating enzyme binding	TCERG1	IPI	UniProtKB:P63279	Human	PMID:20215116
Cellular Component	GO:0005654	nucleoplasm	TCERG1	IDA		Human	GO_REF:0000052
Biological Process	GO:0006397	mRNA processing	TCERG1	IDA		Human	PMID:20215116
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	TCERG1	IDA		Human	PMID:20956529
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	TCERG1	IDA		Human	PMID:20215116
Biological Process	GO:0008380	RNA splicing	TCERG1	IDA		Human	PMID:20215116

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern