Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TCFL5
  • Mouse genes Tcfl5
  • Rat genes Tcfl5
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tcfl5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	TCFL5	IDA		Human	PMID:9763657
Molecular Function	GO:0003677	DNA binding	Tcfl5	IDA		Mouse	PMID:15585666
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	TCFL5	IDA		Human	PMID:12923186
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	TCFL5	IDA		Human	PMID:12923186
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	TCFL5	IDA		Human	PMID:28473536
Cellular Component	GO:0001673	male germ cell nucleus	Tcfl5	IDA		Mouse	PMID:15585666
Cellular Component	GO:0005634	nucleus	TCFL5	IDA		Human	PMID:9763657
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	TCFL5	IDA		Human	PMID:12923186
Biological Process	GO:0045595	regulation of cell differentiation	TCFL5	IEP		Human	PMID:9763657
Biological Process	GO:0042127	regulation of cell population proliferation	TCFL5	IEP		Human	PMID:9763657
Biological Process	GO:0006355	regulation of DNA-templated transcription	TCFL5	IDA		Human	PMID:9763657
Biological Process	GO:0007283	spermatogenesis	TCFL5	IEP		Human	PMID:9763657

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern