Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TDRD1
  • Mouse genes Tdrd1
  • Rat genes Tdrd1
  • Zfish genes tdrd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tdrd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0034584	piRNA binding	tdrd1	IDA		Zfish	PMID:21743441
Molecular Function	GO:0005515	protein binding	Tdrd1	IPI	UniProtKB:Q8BVN9	Mouse	MGI:MGI:3655410|PMID:16787967
Molecular Function	GO:0005515	protein binding	Tdrd1	IPI	UniProtKB:Q8VD46	Mouse	MGI:MGI:4356194|PMID:19730684
Molecular Function	GO:0005515	protein binding	Tdrd1	IPI	UniProtKB:Q8CDG1	Mouse	MGI:MGI:4356231|PMID:19465913
Molecular Function	GO:0005515	protein binding	Tdrd1	IPI	PR:Q8K1H1	Mouse	PMID:17141210
Molecular Function	GO:0005515	protein binding	tdrd1	IPI	UniProtKB:A2CEI6	Zfish	PMID:21743441|ZFIN:ZDB-PUB-110713-60
Molecular Function	GO:0005515	protein binding	tdrd1	IPI	UniProtKB:Q8UVX0	Zfish	PMID:21743441|ZFIN:ZDB-PUB-110713-60
Cellular Component	GO:0033391	chromatoid body	Tdrd1	IDA		Mouse	PMID:17141210
Cellular Component	GO:0005737	cytoplasm	Tdrd1	IDA		Mouse	PMID:14550528
Cellular Component	GO:0005737	cytoplasm	Tdrd1	IDA		Mouse	PMID:17141210
Cellular Component	GO:0043186	P granule	Tdrd1	IDA		Mouse	MGI:MGI:3691397|PMID:17038506
Cellular Component	GO:0043186	P granule	Tdrd1	IDA		Mouse	MGI:MGI:4356231|PMID:19465913
Cellular Component	GO:0043186	P granule	Tdrd1	IDA		Mouse	MGI:MGI:4443217|PMID:20439430
Cellular Component	GO:0071546	pi-body	Tdrd1	IDA		Mouse	MGI:MGI:4418580|PMID:20059948
Cellular Component	GO:0071546	pi-body	Tdrd1	IDA		Mouse	MGI:MGI:4417983|PMID:20011505
Cellular Component	GO:0071546	pi-body	Tdrd1	IDA		Mouse	MGI:MGI:4820495|PMID:19861488
Cellular Component	GO:1990904	ribonucleoprotein complex	Tdrd1	IDA		Mouse	PMID:17141210
Cellular Component	GO:0045202	synapse	Tdrd1	IDA		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Tdrd1	EXP		Mouse	PMID:25211037
Biological Process	GO:0043046	DNA methylation involved in gamete generation	Tdrd1	IMP		Mouse	MGI:MGI:4356231|PMID:19465913
Biological Process	GO:0007281	germ cell development	Tdrd1	IMP		Mouse	MGI:MGI:3691397|PMID:17038506
Biological Process	GO:0030719	P granule organization	tdrd1	IMP	ZFIN:ZDB-GENO-110912-2	Zfish	PMID:21743441
Biological Process	GO:0034587	piRNA processing	Tdrd1	IMP		Mouse	MGI:MGI:4356231|PMID:19465913
Biological Process	GO:0031047	RNA-mediated gene silencing	Tdrd1	IMP		Mouse	MGI:MGI:4356231|PMID:19465913
Biological Process	GO:0007283	spermatogenesis	Tdrd1	IMP		Mouse	MGI:MGI:4356231|PMID:19465913
Biological Process	GO:0007283	spermatogenesis	Tdrd1	IMP		Mouse	MGI:MGI:3691397|PMID:17038506

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern