Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TFPT
  • Mouse genes Tfpt
  • Rat genes Tfpt
  • Zfish genes tfpt
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tfpt

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Tfpt	IDA		Rat	PMID:12841360|RGD:8553527
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q96CJ1	Human	PMID:17395368
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q9Y5K5	Human	PMID:18922472
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q9Y5K5	Human	PMID:19615732
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:P06753	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:P09493-10	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:P06753	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:P07951-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:P20618	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q13188	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q13526	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q2TAC2-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TFPT	IPI	UniProtKB:Q9UFG5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Tfpt	IPI	RGD:62037	Rat	PMID:10644725|RGD:634398
Molecular Function	GO:0005515	protein binding	Tfpt	IPI	UniProtKB:Q62881	Rat	PMID:10644725|RGD:634398
Molecular Function	GO:0005515	protein binding	Tfpt	IPI	UniProtKB:Q62627	Rat	PMID:16229834|RGD:8554822
Molecular Function	GO:0019901	protein kinase binding	Tfpt	IPI	UniProtKB:Q9NYV4	Rat	PMID:12841360|RGD:8553527
Molecular Function	GO:0044877	protein-containing complex binding	Tfpt	IDA		Rat	PMID:10644725|RGD:634398
Cellular Component	GO:0005884	actin filament	Tfpt	IDA		Rat	PMID:16229834|RGD:8554822
Cellular Component	GO:0005737	cytoplasm	Tfpt	IDA		Rat	PMID:16229834|RGD:8554822
Cellular Component	GO:0031011	Ino80 complex	TFPT	IDA		Human	PMID:21303910
Cellular Component	GO:0005654	nucleoplasm	TFPT	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Tfpt	IDA		Rat	PMID:10644725|RGD:634398
Cellular Component	GO:0005634	nucleus	Tfpt	IDA		Rat	PMID:16229834|RGD:8554822
Biological Process	GO:0006915	apoptotic process	Tfpt	IDA		Rat	PMID:16229834|RGD:8554822
Biological Process	GO:0097190	apoptotic signaling pathway	TFPT	IDA		Human	PMID:17041757
Biological Process	GO:0006338	chromatin remodeling	TFPT	IDA		Human	PMID:21303910
Biological Process	GO:0008584	male gonad development	Tfpt	IEP		Rat	PMID:11606057|RGD:634399
Biological Process	GO:0043065	positive regulation of apoptotic process	Tfpt	IDA		Rat	PMID:10644725|RGD:634398
Biological Process	GO:0045739	positive regulation of DNA repair	Tfpt	IDA		Mouse	MGI:MGI:5638510|PMID:23979016
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	TFPT	IMP		Human	PMID:27641337
Biological Process	GO:1904507	positive regulation of telomere maintenance in response to DNA damage	Tfpt	IMP		Mouse	MGI:MGI:5638510|PMID:23979016
Biological Process	GO:0051726	regulation of cell cycle	TFPT	IMP		Human	PMID:26340092
Biological Process	GO:0033044	regulation of chromosome organization	TFPT	IMP		Human	PMID:26340092
Biological Process	GO:0006282	regulation of DNA repair	Tfpt	IDA		Mouse	MGI:MGI:5638510|PMID:23979016
Biological Process	GO:0006275	regulation of DNA replication	TFPT	IMP		Human	PMID:25016522
Biological Process	GO:0060382	regulation of DNA strand elongation	TFPT	IMP		Human	PMID:25016522
Biological Process	GO:0045995	regulation of embryonic development	Tfpt	IMP		Mouse	MGI:MGI:5638510|PMID:23979016
Biological Process	GO:0000723	telomere maintenance	Tfpt	IMP		Mouse	MGI:MGI:5638510|PMID:23979016

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern