Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TGM3
  • Mouse genes Tgm3
  • Rat genes Tgm3
  • Zfish genes tgm5l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tgm3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	TGM3	IDA		Human	PMID:12679341
Molecular Function	GO:0003824	catalytic activity	TGM3	IDA		Human	PMID:8099584
Molecular Function	GO:0003810	protein-glutamine gamma-glutamyltransferase activity	TGM3	IDA		Human	PMID:12679341
Molecular Function	GO:0003810	protein-glutamine gamma-glutamyltransferase activity	TGM3	IDA		Human	PMID:21282207
Molecular Function	GO:0003810	protein-glutamine gamma-glutamyltransferase activity	TGM3	IDA		Human	PMID:8099584
Molecular Function	GO:0005198	structural molecule activity	TGM3	IDA		Human	PMID:5038456
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Tgm3	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0005737	cytoplasm	TGM3	IDA		Human	PMID:12850301
Cellular Component	GO:0005737	cytoplasm	TGM3	IDA		Human	PMID:27866708
Cellular Component	GO:0070062	extracellular exosome	TGM3	HDA		Human	PMID:19199708
Cellular Component	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	TGM3	IDA		Human	PMID:5038456
Cellular Component	GO:0032991	protein-containing complex	TGM3	IDA		Human	PMID:5038456
Biological Process	GO:0043163	cell envelope organization	TGM3	IDA		Human	PMID:24643
Biological Process	GO:0030216	keratinocyte differentiation	TGM3	IEP		Human	PMID:12850301
Biological Process	GO:0018149	peptide cross-linking	TGM3	IDA		Human	PMID:12679341
Biological Process	GO:0018149	peptide cross-linking	TGM3	IDA		Human	PMID:24643

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern