Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TIMD4
  • Mouse genes Timd4
  • Rat genes Timd4
  • Zfish genes havcr1,timd4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Timd4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001786	phosphatidylserine binding	Timd4	IDA		Mouse	PMID:13886198
Molecular Function	GO:0005515	protein binding	Timd4	IPI	UniProtKB:Q5QNS5-2|UniProtKB:Q5QNS5	Mouse	MGI:MGI:6158812|PMID:15793576
Biological Process	GO:0043277	apoptotic cell clearance	Timd4	IDA		Mouse	PMID:29440417
Biological Process	GO:0043277	apoptotic cell clearance	havcr1	IMP	ZFIN:ZDB-MRPHLNO-160413-1,ZFIN:ZDB-MRPHLNO-160413-2	Zfish	PMID:24898390
Biological Process	GO:0060097	cytoskeletal rearrangement involved in phagocytosis, engulfment	havcr1	IMP	ZFIN:ZDB-MRPHLNO-160413-1,ZFIN:ZDB-MRPHLNO-160413-2	Zfish	PMID:24898390
Biological Process	GO:0043652	engulfment of apoptotic cell	havcr1	IMP	ZFIN:ZDB-MRPHLNO-160413-1,ZFIN:ZDB-MRPHLNO-160413-2	Zfish	PMID:24898390

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern