Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TMEM38B
  • Mouse genes Tmem38b
  • Rat genes Tmem38b
  • Zfish genes tmem38b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tmem38b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TMEM38B	IPI	UniProtKB:P29972	Human	PMID:32296183
Cellular Component	GO:0005783	endoplasmic reticulum	Tmem38b	IDA		Mouse	PMID:17611541
Cellular Component	GO:0005634	nucleus	TMEM38B	HDA		Human	PMID:21630459
Biological Process	GO:0060348	bone development	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0030282	bone mineralization	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0071313	cellular response to caffeine	Tmem38b	IGI	MGI:MGI:1921416	Mouse	PMID:17611541
Biological Process	GO:0007029	endoplasmic reticulum organization	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0007029	endoplasmic reticulum organization	Tmem38b	IGI	MGI:MGI:1921416	Mouse	PMID:17611541
Biological Process	GO:0051649	establishment of localization in cell	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0051649	establishment of localization in cell	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693
Biological Process	GO:0070278	extracellular matrix constituent secretion	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0048286	lung alveolus development	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693
Biological Process	GO:0060487	lung epithelial cell differentiation	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693
Biological Process	GO:0001503	ossification	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0008654	phospholipid biosynthetic process	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693
Biological Process	GO:0010881	regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	Tmem38b	IGI	MGI:MGI:1921416	Mouse	PMID:17611541
Biological Process	GO:0051209	release of sequestered calcium ion into cytosol	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693
Biological Process	GO:1903514	release of sequestered calcium ion into cytosol by endoplasmic reticulum	Tmem38b	IMP	MGI:MGI:1921416	Mouse	PMID:27188440
Biological Process	GO:0014808	release of sequestered calcium ion into cytosol by sarcoplasmic reticulum	Tmem38b	IGI	MGI:MGI:1921416	Mouse	PMID:17611541
Biological Process	GO:0061033	secretion by lung epithelial cell involved in lung growth	Tmem38b	IMP	MGI:MGI:3716065	Mouse	PMID:19515693

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern