Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TNFSF13B
  • Mouse genes Tnfsf13b
  • Rat genes Tnfsf13b
  • Zfish genes tnfsf13b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tnfsf13b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TNFSF13B	IPI	UniProtKB:O14836	Human	PMID:10801128
Molecular Function	GO:0005515	protein binding	TNFSF13B	IPI	UniProtKB:O14836	Human	PMID:10880535
Molecular Function	GO:0005515	protein binding	TNFSF13B	IPI	UniProtKB:O14836	Human	PMID:10956646
Molecular Function	GO:0005515	protein binding	TNFSF13B	IPI	UniProtKB:P55060	Human	PMID:30833792
Molecular Function	GO:0005515	protein binding	TNFSF13B	IPI	UniProtKB:Q14974	Human	PMID:30833792
Cellular Component	GO:0005737	cytoplasm	TNFSF13B	IDA		Human	PMID:19828625
Cellular Component	GO:0005925	focal adhesion	TNFSF13B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	TNFSF13B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0048471	perinuclear region of cytoplasm	TNFSF13B	IDA		Human	PMID:19828625
Cellular Component	GO:0005886	plasma membrane	TNFSF13B	IDA		Human	GO_REF:0000052
Biological Process	GO:0031296	B cell costimulation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0030183	B cell differentiation	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:18624351
Biological Process	GO:0001782	B cell homeostasis	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:14557413
Biological Process	GO:0001782	B cell homeostasis	tnfsf13b	IDA		Zfish	PMID:20382231
Biological Process	GO:0042100	B cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0002467	germinal center formation	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:14557413
Biological Process	GO:0002377	immunoglobulin production	Tnfsf13b	IGI	MGI:MGI:88337	Mouse	PMID:15485634
Biological Process	GO:0030890	positive regulation of B cell proliferation	TNFSF13B	IMP		Human	PMID:17499850
Biological Process	GO:0030890	positive regulation of B cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0002636	positive regulation of germinal center formation	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:14557413
Biological Process	GO:0042102	positive regulation of T cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0042102	positive regulation of T cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15368291
Biological Process	GO:0050776	regulation of immune response	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:15368291
Biological Process	GO:0050776	regulation of immune response	Tnfsf13b	IMP	MGI:MGI:2387426	Mouse	PMID:14557413
Biological Process	GO:0031295	T cell costimulation	Tnfsf13b	IDA		Mouse	PMID:15368291
Biological Process	GO:0031295	T cell costimulation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0042098	T cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15368291
Biological Process	GO:0042098	T cell proliferation	Tnfsf13b	IDA		Mouse	PMID:15240667
Biological Process	GO:0033209	tumor necrosis factor-mediated signaling pathway	Tnfsf13b	IGI	MGI:MGI:2143599	Mouse	PMID:18624351

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern