Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TNR
  • Mouse genes Tnr
  • Rat genes Tnr
  • Zfish genes tnr
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tnr

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005178	integrin binding	Tnr	IPI	RGD:2927	Rat	PMID:18658130|RGD:2325684
Cellular Component	GO:0009986	cell surface	Tnr	IDA		Mouse	PMID:12056833
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Tnr	IDA		Mouse	MGI:MGI:6830496|PMID:8244531
Cellular Component	GO:0031012	extracellular matrix	Tnr	IDA		Mouse	PMID:19141078
Cellular Component	GO:0031012	extracellular matrix	Tnr	IDA		Mouse	PMID:7530142
Cellular Component	GO:0031012	extracellular matrix	Tnr	IDA		Rat	PMID:9925948|RGD:634496
Cellular Component	GO:0098965	extracellular matrix of synaptic cleft	Tnr	IDA		Rat	PMID:21734302|RGD:155230724
Cellular Component	GO:0098978	glutamatergic synapse	Tnr	IDA		Mouse	PMID:11377840
Cellular Component	GO:0098978	glutamatergic synapse	Tnr	IMP		Mouse	PMID:11377840
Cellular Component	GO:0098978	glutamatergic synapse	Tnr	IDA		Rat	PMID:21734302|RGD:155230724
Cellular Component	GO:0098686	hippocampal mossy fiber to CA3 synapse	Tnr	IDA		Rat	PMID:11598921|RGD:13702357
Cellular Component	GO:0045121	membrane raft	Tnr	IDA		Mouse	PMID:12056833
Cellular Component	GO:0072534	perineuronal net	Tnr	IDA		Mouse	MGI:MGI:6830496|PMID:8244531
Cellular Component	GO:0072534	perineuronal net	Tnr	IDA		Mouse	PMID:10341229
Cellular Component	GO:0098966	perisynaptic extracellular matrix	Tnr	IDA		Rat	PMID:11598921|RGD:13702357
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Tnr	IDA		Mouse	PMID:11377840
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Tnr	IMP		Mouse	PMID:11377840
Cellular Component	GO:0090733	tenascin complex	Tnr	IPI		Mouse	MGI:MGI:6828676|PMID:2477380
Biological Process	GO:0008306	associative learning	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:12882316
Biological Process	GO:0048675	axon extension	Tnr	IDA		Mouse	PMID:16831557
Biological Process	GO:0048677	axon extension involved in regeneration	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:16870730
Biological Process	GO:0007411	axon guidance	tnr	IDA		Zfish	PMID:15234343
Biological Process	GO:0030198	extracellular matrix organization	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:11077416
Biological Process	GO:0030198	extracellular matrix organization	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:10341229
Biological Process	GO:0030198	extracellular matrix organization	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:16870730
Biological Process	GO:0035641	locomotory exploration behavior	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:14529817
Biological Process	GO:0060291	long-term synaptic potentiation	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:11161481
Biological Process	GO:0060291	long-term synaptic potentiation	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:17537973
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:11377840
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Tnr	IDA		Mouse	PMID:11377840
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Tnr	IMP		Mouse	PMID:11377840
Biological Process	GO:0030517	negative regulation of axon extension	Tnr	IDA		Mouse	PMID:16831557
Biological Process	GO:0048692	negative regulation of axon extension involved in regeneration	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:16870730
Biological Process	GO:0007162	negative regulation of cell adhesion	Tnr	IDA		Rat	PMID:9925948|RGD:634496
Biological Process	GO:0022408	negative regulation of cell-cell adhesion	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:15034584
Biological Process	GO:0022408	negative regulation of cell-cell adhesion	Tnr	IDA		Mouse	PMID:16831557
Biological Process	GO:0010977	negative regulation of neuron projection development	Tnr	IDA		Mouse	MGI:MGI:6827191|PMID:7527058
Biological Process	GO:0010977	negative regulation of neuron projection development	Tnr	IDA		Mouse	PMID:9405406
Biological Process	GO:0050805	negative regulation of synaptic transmission	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:15033179
Biological Process	GO:0097402	neuroblast migration	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:15034584
Biological Process	GO:0050885	neuromuscular process controlling balance	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:12882316
Biological Process	GO:0007158	neuron cell-cell adhesion	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:15034584
Biological Process	GO:0051968	positive regulation of synaptic transmission, glutamatergic	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:11161481
Biological Process	GO:0051971	positive regulation of transmission of nerve impulse	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:10341229
Biological Process	GO:0030155	regulation of cell adhesion	Tnr	IDA		Mouse	MGI:MGI:6828676|PMID:2477380
Biological Process	GO:0045595	regulation of cell differentiation	Tnr	IDA		Mouse	MGI:MGI:6828897|PMID:9169525
Biological Process	GO:0030334	regulation of cell migration	Tnr	IDA		Mouse	MGI:MGI:6828676|PMID:2477380
Biological Process	GO:0050808	synapse organization	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:16262627
Biological Process	GO:0035249	synaptic transmission, glutamatergic	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:11161481
Biological Process	GO:0022029	telencephalon cell migration	Tnr	IMP	MGI:MGI:2154583	Mouse	PMID:15034584

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern