Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRAF3IP1
  • Mouse genes Traf3ip1
  • Rat genes Traf3ip1
  • Zfish genes traf3ip1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Traf3ip1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:Q13114	Human	PMID:10791955
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:Q9NRI5	Human	PMID:12812986
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:P78552	Human	PMID:12935900
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:Q9NRI5	Human	PMID:17043677
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:P11142	Human	PMID:20391533
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:P11142	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	TRAF3IP1	IPI	UniProtKB:Q9NRI5	Human	PMID:31413325
Molecular Function	GO:0005515	protein binding	Traf3ip1	IPI	UniProtKB:P27546	Mouse	MGI:MGI:5707538|PMID:26487268
Molecular Function	GO:0005515	protein binding	Traf3ip1	IPI	PR:Q61025	Mouse	PMID:21307337
Molecular Function	GO:0005515	protein binding	traf3ip1	IPI	ZFIN:ZDB-GENE-040614-2	Zfish	PMID:18364699
Molecular Function	GO:0005515	protein binding	traf3ip1	IPI	ZFIN:ZDB-GENE-060526-165	Zfish	PMID:18364699
Cellular Component	GO:0005930	axoneme	Traf3ip1	IDA		Mouse	PMID:21945076
Cellular Component	GO:0005813	centrosome	Traf3ip1	IDA		Mouse	PMID:19253336
Cellular Component	GO:0036064	ciliary basal body	Traf3ip1	IDA		Mouse	PMID:21945076
Cellular Component	GO:0097546	ciliary base	TRAF3IP1	IDA		Human	PMID:26487268
Cellular Component	GO:0097542	ciliary tip	TRAF3IP1	IDA		Human	PMID:26487268
Cellular Component	GO:0035869	ciliary transition zone	TRAF3IP1	IDA		Human	PMID:26487268
Cellular Component	GO:0005929	cilium	Traf3ip1	IDA		Mouse	PMID:19253336
Cellular Component	GO:0030992	intraciliary transport particle B	TRAF3IP1	IPI		Human	PMID:26980730
Cellular Component	GO:0030992	intraciliary transport particle B	Traf3ip1	IDA		Mouse	MGI:MGI:5607391|PMID:24596149
Cellular Component	GO:0030992	intraciliary transport particle B	Traf3ip1	IDA		Mouse	MGI:MGI:5613829|PMID:25443296
Cellular Component	GO:0030992	intraciliary transport particle B	Traf3ip1	IDA		Mouse	PMID:19253336
Biological Process	GO:0043010	camera-type eye development	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:26487268
Biological Process	GO:0061524	central canal development	traf3ip1	IMP	ZFIN:ZDB-FISH-150901-2113	Zfish	PMID:31916933
Biological Process	GO:0090660	cerebrospinal fluid circulation	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:30612902
Biological Process	GO:0060271	cilium assembly	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0060271	cilium assembly	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:30612902
Biological Process	GO:0060271	cilium assembly	traf3ip1	IMP	ZFIN:ZDB-GENO-160908-11	Zfish	PMID:27207957
Biological Process	GO:0060271	cilium assembly	traf3ip1	IGI	ZFIN:ZDB-MRPHLNO-080724-1,ZFIN:ZDB-MRPHLNO-080724-2	Zfish	PMID:18364699
Biological Process	GO:0060271	cilium assembly	traf3ip1	IMP	ZFIN:ZDB-MRPHLNO-080724-1	Zfish	PMID:18364699
Biological Process	GO:0060271	cilium assembly	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:18364699
Biological Process	GO:0051607	defense response to virus	Traf3ip1	IMP		Mouse	PMID:22079989
Biological Process	GO:0031076	embryonic camera-type eye development	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0042733	embryonic digit morphogenesis	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0035050	embryonic heart tube development	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0032608	interferon-beta production	Traf3ip1	IMP		Mouse	PMID:22079989
Biological Process	GO:0001822	kidney development	TRAF3IP1	IMP		Human	PMID:26487268
Biological Process	GO:0001738	morphogenesis of a polarized epithelium	TRAF3IP1	IDA		Human	PMID:26487268
Biological Process	GO:0001738	morphogenesis of a polarized epithelium	Traf3ip1	IMP		Mouse	MGI:MGI:5707538|PMID:26487268
Biological Process	GO:0050687	negative regulation of defense response to virus	TRAF3IP1	IMP		Human	PMID:22079989
Biological Process	GO:0050687	negative regulation of defense response to virus	Traf3ip1	IMP		Mouse	PMID:22079989
Biological Process	GO:0032688	negative regulation of interferon-beta production	Traf3ip1	IMP		Mouse	PMID:22079989
Biological Process	GO:0001933	negative regulation of protein phosphorylation	TRAF3IP1	IMP		Human	PMID:22079989
Biological Process	GO:0031333	negative regulation of protein-containing complex assembly	TRAF3IP1	IMP		Human	PMID:22079989
Biological Process	GO:1901621	negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0032480	negative regulation of type I interferon production	TRAF3IP1	IMP		Human	PMID:22079989
Biological Process	GO:0021532	neural tube patterning	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0036342	post-anal tail morphogenesis	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076
Biological Process	GO:0048793	pronephros development	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:26487268
Biological Process	GO:0048793	pronephros development	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:9007249
Biological Process	GO:0070507	regulation of microtubule cytoskeleton organization	TRAF3IP1	IMP		Human	PMID:26487268
Biological Process	GO:0070507	regulation of microtubule cytoskeleton organization	Traf3ip1	IMP		Mouse	MGI:MGI:5707538|PMID:26487268
Biological Process	GO:0070507	regulation of microtubule cytoskeleton organization	traf3ip1	IMP		Zfish	PMID:26487268|ZFIN:ZDB-PUB-151022-2
Biological Process	GO:0031113	regulation of microtubule polymerization	traf3ip1	IMP	ZFIN:ZDB-GENO-070808-27	Zfish	PMID:26487268
Biological Process	GO:0060831	smoothened signaling pathway involved in dorsal/ventral neural tube patterning	Traf3ip1	IMP	MGI:MGI:4129326	Mouse	PMID:21945076

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern