Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRAIP
  • Mouse genes Traip
  • Rat genes Traip
  • Zfish genes traip
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Traip

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TRAIP	IPI	UniProtKB:Q9BWF2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:P16333	Human	PMID:17474147
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q15555	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:P12004	Human	PMID:26711499
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:P12004	Human	PMID:27462463
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q15555	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:O15160	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:O15296	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q15555	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q96LK0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q9BS40	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q9UPY8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:P61086	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	TRAIP	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Traip	IPI	PR:P39428	Mouse	PMID:9104814
Molecular Function	GO:0061630	ubiquitin protein ligase activity	Traip	IDA		Mouse	PMID:17544371
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	TRAIP	IDA		Human	PMID:17544371
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	Traip	IDA		Mouse	MGI:MGI:5553244|PMID:17544371
Cellular Component	GO:0005730	nucleolus	TRAIP	IDA		Human	PMID:27462463
Cellular Component	GO:0005730	nucleolus	TRAIP	IDA		Human	PMID:30165463
Cellular Component	GO:0005654	nucleoplasm	TRAIP	IDA		Human	PMID:30165463
Cellular Component	GO:0090734	site of DNA damage	TRAIP	IDA		Human	PMID:26711499
Cellular Component	GO:0090734	site of DNA damage	TRAIP	IDA		Human	PMID:30165463
Biological Process	GO:0006974	DNA damage response	TRAIP	IDA		Human	PMID:26711499
Biological Process	GO:0006974	DNA damage response	TRAIP	IDA		Human	PMID:27462463
Biological Process	GO:0032688	negative regulation of interferon-beta production	Traip	IDA		Mouse	MGI:MGI:5619447|PMID:22945920
Biological Process	GO:0032088	negative regulation of NF-kappaB transcription factor activity	Traip	IDA		Mouse	PMID:9109628
Biological Process	GO:0010804	negative regulation of tumor necrosis factor-mediated signaling pathway	TRAIP	IDA		Human	PMID:19151749
Biological Process	GO:0016567	protein ubiquitination	TRAIP	IDA		Human	PMID:17544371
Biological Process	GO:0016567	protein ubiquitination	TRAIP	IDA		Human	PMID:26711499
Biological Process	GO:0016567	protein ubiquitination	Traip	IDA		Mouse	MGI:MGI:5553244|PMID:17544371
Biological Process	GO:0031297	replication fork processing	TRAIP	IDA		Human	PMID:26711499
Biological Process	GO:0031297	replication fork processing	TRAIP	IMP		Human	PMID:27462463
Biological Process	GO:0007165	signal transduction	Traip	IDA		Mouse	PMID:9104814
Biological Process	GO:0007165	signal transduction	Traip	IPI	PR:P39428	Mouse	PMID:9104814

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern