Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRERF1
  • Mouse genes Trerf1
  • Rat genes Trerf1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trerf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0033142	nuclear progesterone receptor binding	TRERF1	IPI	UniProtKB:P06401	Human	PMID:17015480
Molecular Function	GO:0030374	nuclear receptor coactivator activity	TRERF1	IDA		Human	PMID:17015480
Molecular Function	GO:0005515	protein binding	TRERF1	IPI	UniProtKB:P62508-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRERF1	IPI	UniProtKB:P46934	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	TRERF1	IPI	UniProtKB:P46937	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	TRERF1	IPI	UniProtKB:Q14145	Human	PMID:35044719
Molecular Function	GO:0003713	transcription coactivator activity	TRERF1	IDA		Human	PMID:11349124
Molecular Function	GO:0001223	transcription coactivator binding	TRERF1	IPI	UniProtKB:Q09472	Human	PMID:11349124
Molecular Function	GO:0001223	transcription coactivator binding	TRERF1	IPI	UniProtKB:Q92793	Human	PMID:11349124
Cellular Component	GO:0005829	cytosol	TRERF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0001650	fibrillar center	TRERF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	TRERF1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	TRERF1	IDA		Human	PMID:11349124
Cellular Component	GO:0005634	nucleus	TRERF1	IDA		Human	PMID:16371131
Biological Process	GO:0071393	cellular response to progesterone stimulus	TRERF1	IDA		Human	PMID:17015480
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	TRERF1	IDA		Human	PMID:11349124
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	TRERF1	IDA		Human	PMID:17015480
Biological Process	GO:0050847	progesterone receptor signaling pathway	TRERF1	IDA		Human	PMID:17015480

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern