Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM3
  • Mouse genes Trim3
  • Rat genes Trim3
  • Zfish genes trim3a,trim3b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TRIM3	IPI	UniProtKB:O75382	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9HCC9	Human	PMID:19460345
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9C040	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P04424	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P19474	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P28347-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P48730	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P49674	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P51668	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q15562-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q6NSJ5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q7KZS0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q8NFA0-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q8NHQ1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q8TBB1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q96LR5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q96MP8-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9C040	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9H832	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9HAT0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:Q9ULV0-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TRIM3	IPI	UniProtKB:P0DTD1:PRO_0000449633	Human	PMID:33060197
Molecular Function	GO:0005515	protein binding	Trim3	IPI	PR:Q9R1R2	Mouse	PMID:11331580
Molecular Function	GO:0005515	protein binding	Trim3	IPI	RGD:61816	Rat	PMID:10673389|RGD:61532
Molecular Function	GO:0061630	ubiquitin protein ligase activity	TRIM3	IDA		Human	PMID:32878999
Molecular Function	GO:0061630	ubiquitin protein ligase activity	Trim3	IDA		Mouse	PMID:24393003
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	Trim3	IDA		Mouse	MGI:MGI:5567886|PMID:24393003
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	trim3a	IDA		Zfish	PMID:22300786
Cellular Component	GO:0005737	cytoplasm	Trim3	IDA		Mouse	PMID:11331580
Cellular Component	GO:0005737	cytoplasm	Trim3	IDA		Rat	PMID:10673389|RGD:61532
Cellular Component	GO:0005769	early endosome	TRIM3	IDA		Human	PMID:32878999
Cellular Component	GO:0098978	glutamatergic synapse	Trim3	IDA		Rat	PMID:20352094|RGD:13702372
Cellular Component	GO:0098978	glutamatergic synapse	Trim3	IMP		Rat	PMID:20352094|RGD:13702372
Cellular Component	GO:0098794	postsynapse	Trim3	IDA		Rat	PMID:20352094|RGD:13702372
Biological Process	GO:0034141	positive regulation of toll-like receptor 3 signaling pathway	TRIM3	IDA		Human	PMID:32878999
Biological Process	GO:0070534	protein K63-linked ubiquitination	TRIM3	IDA		Human	PMID:32878999
Biological Process	GO:0016567	protein ubiquitination	Trim3	IDA		Mouse	MGI:MGI:5567886|PMID:24393003
Biological Process	GO:0016567	protein ubiquitination	trim3a	IDA		Zfish	PMID:22300786|ZFIN:ZDB-PUB-120207-2
Biological Process	GO:0140252	regulation protein catabolic process at postsynapse	Trim3	IDA		Rat	PMID:20352094|RGD:13702372
Biological Process	GO:0140252	regulation protein catabolic process at postsynapse	Trim3	IEP		Rat	PMID:20352094|RGD:13702372
Biological Process	GO:0140252	regulation protein catabolic process at postsynapse	Trim3	IMP		Rat	PMID:20352094|RGD:13702372

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern