Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM39
  • Mouse genes Trim39
  • Rat genes Trim39
  • Zfish genes btr04,btr20,btr21,btr25
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TRIM39	IPI	UniProtKB:Q9HCM9	Human	PMID:16189514
Molecular Function	GO:0042802	identical protein binding	TRIM39	IPI	UniProtKB:Q9HCM9	Human	PMID:21516116
Molecular Function	GO:0042802	identical protein binding	TRIM39	IPI	UniProtKB:Q9HCM9	Human	PMID:22493164
Molecular Function	GO:0042802	identical protein binding	TRIM39	IPI	UniProtKB:Q9HCM9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P51668	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P61077	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96GG9	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9HAC8	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y2X8	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y577	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P16333	Human	PMID:17474147
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96BY2	Human	PMID:19100260
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P51668	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P61077	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q969T4	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96LR5	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y2X8	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:O00233	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:O43395	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P51668	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96LR5	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9UNA4	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P19474	Human	PMID:22493164
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y577	Human	PMID:22493164
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P38936	Human	PMID:23213251
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:A2RU48	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:A8K2R3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:B2R886	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:O00233	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:O15197-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:O43395	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P17031	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P19474	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P24863	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P51668	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P60900	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P61077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P61086	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q04323	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q14240	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q14240-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q14689-6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q5I0X7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q6P9E2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q8IZQ1-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q8TBB1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q969J2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q969T4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96GG9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96LR5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BS40	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BSL1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BUE0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BZV1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9HAC8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9UNA4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y2X8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y577	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BZV1	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y577	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P17031	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P24863	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:P61077	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q14240	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q969T4	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q96LR5	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9BZV1	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRIM39	IPI	UniProtKB:Q9Y577	Human	PMID:31515488
Molecular Function	GO:0061630	ubiquitin protein ligase activity	btr20	IDA		Zfish	PMID:25542153
Cellular Component	GO:0005737	cytoplasm	btr20	IDA		Zfish	PMID:25542153
Cellular Component	GO:0005829	cytosol	TRIM39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	TRIM39	IDA		Human	PMID:19100260
Cellular Component	GO:0005739	mitochondrion	TRIM39	IDA		Human	PMID:19100260
Cellular Component	GO:0005634	nucleus	TRIM39	IDA		Human	PMID:23213251
Biological Process	GO:0007095	mitotic G2 DNA damage checkpoint signaling	TRIM39	IMP		Human	PMID:23213251
Biological Process	GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	TRIM39	IMP		Human	PMID:26363554
Biological Process	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	TRIM39	IMP		Human	PMID:23213251
Biological Process	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	TRIM39	IDA		Human	PMID:19100260
Biological Process	GO:2001235	positive regulation of apoptotic signaling pathway	TRIM39	IDA		Human	PMID:19100260
Biological Process	GO:0050821	protein stabilization	TRIM39	IMP		Human	PMID:23213251
Biological Process	GO:0050821	protein stabilization	TRIM39	IMP		Human	PMID:26363554
Biological Process	GO:1902806	regulation of cell cycle G1/S phase transition	TRIM39	IMP		Human	PMID:23213251

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern